Guide to the Human Genome
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Name: C2orf77 Sequence: fasta or formatted (552aa) NCBI GI: 146260271
Description:

hypothetical protein LOC129881

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         41           2
 C cysteine            0.7          4           1
 D aspartate           4.5         25           1
 E glutamate          16.5         91           5
 F phenylalanine       2.7         15           1
 G glycine             2.9         16           3
 H histidine           2.7         15           1
 I isoleucine          5.3         29           2
 K lysine             14.1         78           3
 L leucine             7.2         40           3
 M methionine          2.7         15           1
 N asparagine          2.9         16           1
 P proline             1.6          9           1
 Q glutamine           6.7         37           4
 R arginine            8.7         48           3
 S serine              3.1         17           2
 T threonine           2.5         14           2
 V valine              3.8         21           2
 W tryptophan          1.1          6           1
 Y tyrosine            2.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC129881 
LOC283685             0.069   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TCHH                  0.068   trichohyalin 
LOC727832             0.065   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.062   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283685             0.061   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC645202             0.061   PREDICTED: hypothetical protein LOC645202 
LOC283767             0.060   golgi autoantigen, golgin subfamily a-like 
TCHP                  0.058   trichoplein 
TCHP                  0.058   trichoplein 
CCDC19                0.057   nasopharyngeal epithelium specific protein 1 
LOC100286959          0.055   PREDICTED: hypothetical protein XP_002343921 
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
RBM25                 0.055   RNA binding motif protein 25 
GOLGA4                0.053   golgi autoantigen, golgin subfamily a, 4 
PLEC1                 0.052   plectin 1 isoform 11 
PLEC1                 0.052   plectin 1 isoform 10 
PLEC1                 0.052   plectin 1 isoform 8 
PLEC1                 0.052   plectin 1 isoform 7 
PLEC1                 0.052   plectin 1 isoform 6 
PLEC1                 0.052   plectin 1 isoform 3 
PLEC1                 0.052   plectin 1 isoform 2 
PLEC1                 0.052   plectin 1 isoform 1 
LOC400352             0.051   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.051   PREDICTED: similar to Putative golgin subfamily A m...
LOC100133599          0.051   PREDICTED: hypothetical protein 
CCDC46                0.051   coiled-coil domain containing 46 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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