CALD1 5181

Name: CALD1	Sequence: fasta or formatted (564aa)		NCBI GI: 15149467
Description: caldesmon 1 isoform 3		Referenced in: Cytoskeleton
Other entries for this name: alt prot [558aa] caldesmon 1 isoform 4 alt prot [532aa] caldesmon 1 isoform 5 alt prot [793aa] caldesmon 1 isoform 1 alt prot [538aa] caldesmon 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 37 2 C cysteine 0.2 1 1 D aspartate 5.3 30 3 E glutamate 18.1 102 6 F phenylalanine 2.3 13 1 G glycine 4.3 24 2 H histidine 0.5 3 1 I isoleucine 2.3 13 1 K lysine 12.8 72 3 L leucine 5.3 30 1 M methionine 1.2 7 1 N asparagine 3.2 18 1 P proline 4.1 23 1 Q glutamine 5.3 30 2 R arginine 10.3 58 4 S serine 6.6 37 2 T threonine 6.0 34 4 V valine 4.3 24 1 W tryptophan 0.7 4 1 Y tyrosine 0.7 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 caldesmon 1 isoform 3 CALD1 0.957 caldesmon 1 isoform 4 CALD1 0.939 caldesmon 1 isoform 2 CALD1 0.897 caldesmon 1 isoform 5 CALD1 0.665 caldesmon 1 isoform 1 TCHH 0.083 trichohyalin LOC283685 0.079 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100286959 0.078 PREDICTED: hypothetical protein XP_002343921 LOC727832 0.077 golgi autoantigen, golgin subfamily a-like LOC283685 0.075 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100133758 0.073 PREDICTED: hypothetical protein, partial LOC283767 0.070 golgi autoantigen, golgin subfamily a-like LOC440243 0.070 PREDICTED: Putative golgin subfamily A member 6-lik... LOC645202 0.066 PREDICTED: hypothetical protein LOC645202 LOC400352 0.062 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.062 PREDICTED: similar to Putative golgin subfamily A m... RPGR 0.062 retinitis pigmentosa GTPase regulator isoform C [Hom... NEXN 0.062 nexilin (F actin binding protein) RBM25 0.059 RNA binding motif protein 25 EIF5B 0.058 eukaryotic translation initiation factor 5B ATRX 0.057 transcriptional regulator ATRX isoform 2 ATRX 0.057 transcriptional regulator ATRX isoform 1 PLEC1 0.056 plectin 1 isoform 11 PLEC1 0.056 plectin 1 isoform 10 PLEC1 0.056 plectin 1 isoform 8 PLEC1 0.056 plectin 1 isoform 7 PLEC1 0.056 plectin 1 isoform 6 PLEC1 0.056 plectin 1 isoform 3 PLEC1 0.056 plectin 1 isoform 2 PLEC1 0.056 plectin 1 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.