CALD1 28159

Name: CALD1	Sequence: fasta or formatted (793aa)		NCBI GI: 44680105
Description: caldesmon 1 isoform 1		Referenced in: Cytoskeleton
Other entries for this name: alt prot [558aa] caldesmon 1 isoform 4 alt prot [532aa] caldesmon 1 isoform 5 alt prot [564aa] caldesmon 1 isoform 3 alt prot [538aa] caldesmon 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 63 3 C cysteine 0.1 1 1 D aspartate 4.4 35 3 E glutamate 21.6 171 6 F phenylalanine 1.6 13 1 G glycine 3.5 28 2 H histidine 0.8 6 2 I isoleucine 2.9 23 1 K lysine 13.1 104 3 L leucine 4.4 35 1 M methionine 1.5 12 1 N asparagine 2.6 21 1 P proline 3.0 24 1 Q glutamine 5.9 47 2 R arginine 10.8 86 4 S serine 5.4 43 2 T threonine 4.9 39 4 V valine 4.2 33 2 W tryptophan 0.6 5 1 Y tyrosine 0.5 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 caldesmon 1 isoform 1 CALD1 0.475 caldesmon 1 isoform 3 CALD1 0.472 caldesmon 1 isoform 4 CALD1 0.445 caldesmon 1 isoform 2 CALD1 0.442 caldesmon 1 isoform 5 TCHH 0.109 trichohyalin LOC283685 0.105 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.099 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC727832 0.094 golgi autoantigen, golgin subfamily a-like LOC283767 0.081 golgi autoantigen, golgin subfamily a-like LOC440243 0.080 PREDICTED: Putative golgin subfamily A member 6-lik... PLEC1 0.079 plectin 1 isoform 11 PLEC1 0.079 plectin 1 isoform 10 PLEC1 0.079 plectin 1 isoform 8 PLEC1 0.079 plectin 1 isoform 7 PLEC1 0.079 plectin 1 isoform 6 PLEC1 0.079 plectin 1 isoform 3 PLEC1 0.079 plectin 1 isoform 2 PLEC1 0.079 plectin 1 isoform 1 LOC645202 0.077 PREDICTED: hypothetical protein LOC645202 LOC100286959 0.077 PREDICTED: hypothetical protein XP_002343921 LOC100133758 0.074 PREDICTED: hypothetical protein, partial WDR87 0.072 NYD-SP11 protein NEXN 0.071 nexilin (F actin binding protein) RBM25 0.070 RNA binding motif protein 25 NEFH 0.069 neurofilament, heavy polypeptide 200kDa ZC3H13 0.067 zinc finger CCCH-type containing 13 EIF5B 0.066 eukaryotic translation initiation factor 5B ITSN2 0.062 intersectin 2 isoform 3 LOC100133220 0.061 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.