Search of human proteins with 149944573

Search of human proteins with 149944573

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|149944573 keratin associated protein 19-8 [Homo sapiens]
         (63 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|149944573 keratin associated protein 19-8 [Homo sapiens]           154   1e-38
gi|31791026 keratin associated protein 19-3 [Homo sapiens]            114   2e-26
gi|31791018 keratin associated protein 19-7 [Homo sapiens]            114   2e-26
gi|31791028 keratin associated protein 19-4 [Homo sapiens]            112   6e-26
gi|31791022 keratin associated protein 19-5 [Homo sapiens]            109   5e-25
gi|31791030 keratin associated protein 19-1 [Homo sapiens]            102   9e-23
gi|31791024 keratin associated protein 19-6 [Homo sapiens]             88   2e-18
gi|31791014 keratin associated protein 20-2 [Homo sapiens]             84   2e-17
gi|31791038 keratin associated protein 6-1 [Homo sapiens]              69   1e-12
gi|31791016 keratin associated protein 21-2 [Homo sapiens]             63   6e-11
gi|31791020 keratin associated protein 20-1 [Homo sapiens]             63   6e-11
gi|153945796 keratin associated protein 6-3 [Homo sapiens]             59   1e-09
gi|31791040 keratin associated protein 6-2 [Homo sapiens]              56   5e-09
gi|31791032 keratin associated protein 19-2 [Homo sapiens]             56   7e-09
gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]            55   9e-09
gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]            55   9e-09
gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]            55   9e-09
gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]            55   1e-08
gi|189303554 keratin associated protein 20-3 [Homo sapiens]            51   2e-07
gi|31791010 keratin associated protein 21-1 [Homo sapiens]             49   1e-06
gi|109288006 keratin associated protein 13-1 [Homo sapiens]            47   3e-06
gi|119395750 keratin 1 [Homo sapiens]                                  46   6e-06
gi|4505487 occludin [Homo sapiens]                                     45   2e-05
gi|119395754 keratin 5 [Homo sapiens]                                  45   2e-05
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...    45   2e-05
gi|31791006 keratin associated protein 13-2 [Homo sapiens]             44   3e-05
gi|109452587 family with sequence similarity 98, member B isofor...    43   6e-05
gi|31791012 keratin associated protein 22-1 [Homo sapiens]             42   8e-05
gi|55956899 keratin 9 [Homo sapiens]                                   42   1e-04
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...    42   1e-04

>gi|149944573 keratin associated protein 19-8 [Homo sapiens]
          Length = 63

 Score =  154 bits (389), Expect = 1e-38
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS 60
          MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS
Sbjct: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS 60

Query: 61 AFY 63
          AFY
Sbjct: 61 AFY 63


>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
          Length = 81

 Score =  114 bits (285), Expect = 2e-26
 Identities = 53/81 (65%), Positives = 54/81 (66%), Gaps = 18/81 (22%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGY------------------G 42
          MSYY SYYGGLGYG GGFGG GYGYGCG GSFRRLG GCGY                  G
Sbjct: 1  MSYYGSYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSGFG 60

Query: 43 GYGFSCCRPLYYGGYGFSAFY 63
          GYG+ C RP YYGGYGFS FY
Sbjct: 61 GYGYGCYRPSYYGGYGFSGFY 81


>gi|31791018 keratin associated protein 19-7 [Homo sapiens]
          Length = 63

 Score =  114 bits (285), Expect = 2e-26
 Identities = 49/63 (77%), Positives = 50/63 (79%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS 60
          MSY  SYYGGLGYG GGFGG GYGY CG GSFRRLGYGCGYGGY +SCC P  YGGY  S
Sbjct: 1  MSYSGSYYGGLGYGCGGFGGLGYGYSCGCGSFRRLGYGCGYGGYRYSCCHPSCYGGYWSS 60

Query: 61 AFY 63
           FY
Sbjct: 61 GFY 63


>gi|31791028 keratin associated protein 19-4 [Homo sapiens]
          Length = 84

 Score =  112 bits (280), Expect = 6e-26
 Identities = 48/60 (80%), Positives = 50/60 (83%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS 60
          MSYY SYY GLGYG GGFGG GYGYGCG GSFRRLGYGCG+GG G+  CRP  YGGYGFS
Sbjct: 1  MSYYGSYYRGLGYGCGGFGGLGYGYGCGCGSFRRLGYGCGFGGNGYGYCRPSCYGGYGFS 60


>gi|31791022 keratin associated protein 19-5 [Homo sapiens]
          Length = 72

 Score =  109 bits (272), Expect = 5e-25
 Identities = 49/72 (68%), Positives = 52/72 (72%), Gaps = 9/72 (12%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFS---------CCRP 51
          M+YY +YYGGLGYGYGGF   GYGYGCG GSFRRLGYG GYGGYG+           CRP
Sbjct: 1  MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60

Query: 52 LYYGGYGFSAFY 63
            YGGYGFS FY
Sbjct: 61 SCYGGYGFSGFY 72


>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
          Length = 90

 Score =  102 bits (253), Expect = 9e-23
 Identities = 49/90 (54%), Positives = 51/90 (56%), Gaps = 27/90 (30%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGY------------------- 41
          MS+Y SYYGGLGY  GGFGG GYGYGCG GSF R G GCGY                   
Sbjct: 1  MSHYGSYYGGLGYSCGGFGGLGYGYGCGCGSFCRRGSGCGYGGYGYGSGFGSYGYGSGFG 60

Query: 42 --------GGYGFSCCRPLYYGGYGFSAFY 63
                  GGYG+ CCRP Y GGYGFS FY
Sbjct: 61 GYGYGSGFGGYGYGCCRPSYNGGYGFSGFY 90


>gi|31791024 keratin associated protein 19-6 [Homo sapiens]
          Length = 58

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 41/63 (65%), Positives = 43/63 (68%), Gaps = 5/63 (7%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS 60
          M YY SYY GLGYG GGFG  G GYGCG G +R   YG GYGGY + CCRP    GYGFS
Sbjct: 1  MRYYGSYYRGLGYGCGGFG--GLGYGCGCGGYR---YGSGYGGYRYGCCRPSCREGYGFS 55

Query: 61 AFY 63
           FY
Sbjct: 56 GFY 58


>gi|31791014 keratin associated protein 20-2 [Homo sapiens]
          Length = 65

 Score = 84.3 bits (207), Expect = 2e-17
 Identities = 40/66 (60%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYG---SFRRLGYGCGYGGYGFSCCRPLYYGGY 57
          M YY +YYGGL YGYG  GG GYG GCGYG        GYG GYGGYG+ CCRP  YG Y
Sbjct: 1  MCYYSNYYGGLRYGYGVLGG-GYGCGCGYGHGYGGLGCGYGRGYGGYGYGCCRPSCYGRY 59

Query: 58 GFSAFY 63
              FY
Sbjct: 60 WSCGFY 65


>gi|31791038 keratin associated protein 6-1 [Homo sapiens]
          Length = 71

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 35/60 (58%), Positives = 39/60 (65%), Gaps = 13/60 (21%)

Query: 2  SYYRSYYGGLGYGYGGFGGWGYGY---GCGYGS-----FRRLGYGCGYG-----GYGFSC 48
          SYY +YYG  GYG+ G+GG GYGY   GCGYGS     FRRLG G GYG     GYG+ C
Sbjct: 4  SYYGNYYGTPGYGFCGYGGLGYGYGGLGCGYGSCCGCGFRRLGCGYGYGSRSLCGYGYGC 63


>gi|31791016 keratin associated protein 21-2 [Homo sapiens]
          Length = 83

 Score = 62.8 bits (151), Expect = 6e-11
 Identities = 37/72 (51%), Positives = 39/72 (54%), Gaps = 19/72 (26%)

Query: 2  SYYRSYYGGLGYGYGGFGGWGY--GYGCGYGSFRR--------LGYGCGYG-------GY 44
          +YYR+  GG GYG G   G GY  GYGCGYGS  R         GYGCGYG       GY
Sbjct: 4  NYYRNCCGGCGYGSGWSSGCGYGCGYGCGYGSGCRYGSGYGTGCGYGCGYGSGCGYGCGY 63

Query: 45 GFSCC--RPLYY 54
            SCC  RPL Y
Sbjct: 64 SSSCCGYRPLCY 75


>gi|31791020 keratin associated protein 20-1 [Homo sapiens]
          Length = 56

 Score = 62.8 bits (151), Expect = 6e-11
 Identities = 35/68 (51%), Positives = 37/68 (54%), Gaps = 17/68 (25%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGY-----GFSCCRPLYYG 55
          M YY +YYGG GYG     G G GYGCGY      GYGCGYGGY     G+ C  P  YG
Sbjct: 1  MIYYSNYYGGYGYG-----GLGCGYGCGYR-----GYGCGYGGYGGYGNGYYC--PSCYG 48

Query: 56 GYGFSAFY 63
           Y    FY
Sbjct: 49 RYWSYGFY 56


>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
          Length = 110

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 37/71 (52%), Positives = 41/71 (57%), Gaps = 14/71 (19%)

Query: 2  SYYRSYYGGLGYGYGGFGGWGYGY-GCGYG--SFRRLGYG-----CGYGGYGF---SCCR 50
          SYYR+Y GG GYG  G+GG G GY GCGYG   +  LG+G     CGYGG G    S C 
Sbjct: 11 SYYRNYNGGHGYGCCGYGGLGCGYGGCGYGCCGYGGLGFGYGGLDCGYGGLGCGYGSFCG 70

Query: 51 PLYYG---GYG 58
            Y G   GYG
Sbjct: 71 CGYRGLDCGYG 81



 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 33/64 (51%), Positives = 38/64 (59%), Gaps = 9/64 (14%)

Query: 8   YGGLGYGYGGFG-GWGYGYGCGYGSF-----RRL--GYGCGYGGYGFSCCRPLYYGGYGF 59
           YGGLG+GYGG   G+G G GCGYGSF     R L  GYGCGYG    S C   Y  G G+
Sbjct: 44  YGGLGFGYGGLDCGYG-GLGCGYGSFCGCGYRGLDCGYGCGYGYVSHSFCGCGYRCGSGY 102

Query: 60  SAFY 63
            + +
Sbjct: 103 GSSF 106



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 27/58 (46%)

Query: 8   YGGLGYGYGGFGGWGY---------------------GYGCGYGSFRRLGYGCGYGGY 44
           YGGLG GYG F G GY                     GY CG       GYG  +G Y
Sbjct: 58  YGGLGCGYGSFCGCGYRGLDCGYGCGYGYVSHSFCGCGYRCG------SGYGSSFGYY 109


>gi|31791040 keratin associated protein 6-2 [Homo sapiens]
          Length = 62

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 31/61 (50%), Positives = 34/61 (55%), Gaps = 10/61 (16%)

Query: 2  SYYRSYYGGLGYGYGGFGGWGYGYG---CGYGSFRRLGYGCGYG-----GYGFSCCRPLY 53
          SYY +YYG  GYG  G+ G GYGYG   CGY S    GYG GYG     G G+ C    Y
Sbjct: 4  SYYGNYYGDHGYGCCGYEGLGYGYGSLRCGYSSC--CGYGHGYGSRFFCGCGYGCGSGYY 61

Query: 54 Y 54
          Y
Sbjct: 62 Y 62


>gi|31791032 keratin associated protein 19-2 [Homo sapiens]
          Length = 52

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 27/50 (54%), Positives = 28/50 (56%), Gaps = 9/50 (18%)

Query: 23 YGYGCGYGSFRRLGYGCGY---------GGYGFSCCRPLYYGGYGFSAFY 63
          YGYGCG GSF RLGYGCGY          G G  CC P  Y  Y F+ FY
Sbjct: 3  YGYGCGCGSFCRLGYGCGYEGCRYGCGHRGCGDGCCCPSCYRRYRFTGFY 52


>gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 93

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 30/55 (54%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 4  YRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYGGY 57
          Y S YG  GYG G   G+G G GCGYG+    GYGCGYG GYG  C     Y GY
Sbjct: 28 YGSSYG-CGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCGY 81



 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 31/66 (46%), Positives = 34/66 (51%), Gaps = 13/66 (19%)

Query: 6  SYYGG-LGYGYGGFGGWGYGYGCGYGSFRRLGYG----CGYG-------GYGFSCCRPLY 53
          +YYG   GYG     G+G GYGCGYGS    GYG    CGYG       G G+ C     
Sbjct: 4  NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCG 63

Query: 54 YG-GYG 58
          YG GYG
Sbjct: 64 YGTGYG 69



 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 23/51 (45%), Positives = 23/51 (45%)

Query: 3  YYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLY 53
          Y   Y  G G GYG   G GYG G G G     G G GY GY   C R  Y
Sbjct: 40 YSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCGYRPFCFRRCY 90


>gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 93

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 30/55 (54%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 4  YRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYGGY 57
          Y S YG  GYG G   G+G G GCGYG+    GYGCGYG GYG  C     Y GY
Sbjct: 28 YGSSYG-CGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCGY 81



 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 31/66 (46%), Positives = 34/66 (51%), Gaps = 13/66 (19%)

Query: 6  SYYGG-LGYGYGGFGGWGYGYGCGYGSFRRLGYG----CGYG-------GYGFSCCRPLY 53
          +YYG   GYG     G+G GYGCGYGS    GYG    CGYG       G G+ C     
Sbjct: 4  NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCG 63

Query: 54 YG-GYG 58
          YG GYG
Sbjct: 64 YGTGYG 69



 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 23/51 (45%), Positives = 23/51 (45%)

Query: 3  YYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLY 53
          Y   Y  G G GYG   G GYG G G G     G G GY GY   C R  Y
Sbjct: 40 YSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCGYRPFCFRRCY 90


>gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 30/55 (54%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 4   YRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYGGY 57
           Y S YG  GYG G   G+G G GCGYG+    GYGCGYG GYG  C     Y GY
Sbjct: 58  YGSSYG-CGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCGY 111



 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 31/66 (46%), Positives = 34/66 (51%), Gaps = 13/66 (19%)

Query: 6  SYYGG-LGYGYGGFGGWGYGYGCGYGSFRRLGYG----CGYG-------GYGFSCCRPLY 53
          +YYG   GYG     G+G GYGCGYGS    GYG    CGYG       G G+ C     
Sbjct: 34 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCG 93

Query: 54 YG-GYG 58
          YG GYG
Sbjct: 94 YGTGYG 99



 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 23/51 (45%), Positives = 23/51 (45%)

Query: 3   YYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLY 53
           Y   Y  G G GYG   G GYG G G G     G G GY GY   C R  Y
Sbjct: 70  YSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGYCGYRPFCFRRCY 120


>gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 29/55 (52%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 7  YYGGLGYGYGGFGGWGYG--YGCGYGSFRRLGYGCGYGGYGFSCCRPLYYG-GYG 58
          Y    G GYG   G+GYG  YGCGYG+    GYGCGYG  G+ C     YG GYG
Sbjct: 12 YGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGS-GYGCGYGSSYGCGYG 65



 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 32/62 (51%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 4   YRSYYG-GLGYGYG-GFG-----GWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYG 55
           Y S YG G G GY  G+G     G+G G GCGYG+    GYGCGYG GYG  C     Y 
Sbjct: 56  YGSSYGCGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGYC 115

Query: 56  GY 57
           GY
Sbjct: 116 GY 117



 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 33/74 (44%), Positives = 36/74 (48%), Gaps = 24/74 (32%)

Query: 2  SYYRSYYGGLGYGYG-------------GFG-GWGYGYGCGYGSFRRLGYGCGYG---GY 44
          SY   Y  G GYGYG             G+G G+G GYGCGYGS    GYG GY    G 
Sbjct: 15 SYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGS 74

Query: 45 GFSCCRPLYYGGYG 58
          G+SC       GYG
Sbjct: 75 GYSC-------GYG 81



 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 32/66 (48%), Positives = 32/66 (48%), Gaps = 14/66 (21%)

Query: 3   YYRSYYGGLGYGYGGFGGWGYG--YGCGYGSFRRLGYGCGYG-------GYGFSCCRPLY 53
           Y   Y  G G GYG   G GYG  Y CGYGS    GY CGYG       G GF C     
Sbjct: 44  YGCGYGSGYGCGYGSSYGCGYGTGYSCGYGS----GYSCGYGSGSGCGYGTGFGCGYGCG 99

Query: 54  YG-GYG 58
           YG GYG
Sbjct: 100 YGTGYG 105



 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 15 YGGFGGWGYGYGCGYGSFRRLGYGCGYG---GYGFSCCRPLYYG-GYG 58
          YG   G+G  YGCGYGS    GYG  YG   G G+SC     YG GYG
Sbjct: 6  YGNSCGYGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSGYG 53



 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YYRSYYGGLGYGYGGFGGWGY--GYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYY 54
           Y   Y  G   GYG   G GY  G+GCGYG     GYGCG G G G+   RP  +
Sbjct: 68  YSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGYCGYRPFCF 122



 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 23/51 (45%), Positives = 23/51 (45%)

Query: 3   YYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLY 53
           Y   Y  G G GYG   G GYG G G G     G G GY GY   C R  Y
Sbjct: 76  YSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGYCGYRPFCFRRCY 126


>gi|189303554 keratin associated protein 20-3 [Homo sapiens]
          Length = 44

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 6/45 (13%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRL--GYGCGYGG 43
          MSYY +YYGGLGYGY       Y Y  G+G+FR L  GY CG GG
Sbjct: 1  MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41


>gi|31791010 keratin associated protein 21-1 [Homo sapiens]
          Length = 79

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 26/48 (54%), Positives = 29/48 (60%), Gaps = 9/48 (18%)

Query: 7  YYGGLGYGYG-------GFG-GWGYGYGCGYGSFRRLGYGCGYG-GYG 45
          Y  G G GYG       G+G G+G GYGCG+GS    GYG GYG GYG
Sbjct: 12 YGSGCGCGYGSGSGCGCGYGTGYGCGYGCGFGSHYGCGYGTGYGCGYG 59



 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 7/63 (11%)

Query: 6  SYYGG-LGYGYG---GFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYG-GYGFS 60
          +YYG   GYG G   G+G  G G GCGYG+    GYGCG+G + + C     YG GYG  
Sbjct: 4  NYYGNSCGYGSGCGCGYGS-GSGCGCGYGTGYGCGYGCGFGSH-YGCGYGTGYGCGYGSG 61

Query: 61 AFY 63
          + Y
Sbjct: 62 SGY 64



 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 10 GLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYY 54
          G GYG G   G+G  YGCGYG+    GYGCGYG G G+   RP  +
Sbjct: 31 GTGYGCGYGCGFGSHYGCGYGT----GYGCGYGSGSGYCGYRPFCF 72



 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 27/53 (50%), Positives = 28/53 (52%), Gaps = 12/53 (22%)

Query: 7  YYGGLGYGYG-GFG-----GWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLY 53
          Y  G G GYG GFG     G+G GYGCGYGS      G GY GY   C R  Y
Sbjct: 30 YGTGYGCGYGCGFGSHYGCGYGTGYGCGYGS------GSGYCGYRPFCFRRCY 76


>gi|109288006 keratin associated protein 13-1 [Homo sapiens]
          Length = 172

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 6   SYYGGLGYGYGGFGGWGYG------YGCGYGSFRRLGY-GCGYG--GYGFSCCRPLY 53
           +Y G LG+G       GYG       GCG   FR LGY GCG+   GYG   CRP Y
Sbjct: 95  TYSGSLGFGSSSCRSLGYGSRSCYSVGCGSSGFRSLGYGGCGFPSLGYGVGFCRPTY 151


>gi|119395750 keratin 1 [Homo sapiens]
          Length = 644

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 8/55 (14%)

Query: 8   YGGLGYGYGGFGGWGYG----YGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           YGG G+G GGFGG G+G     G G+G F   G G G GG+G       Y GGYG
Sbjct: 94  YGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGG----YGGGYG 144



 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 22/50 (44%), Positives = 25/50 (50%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           GG G G G +G  G  YG G GS+   G G G+G YG       Y GG G
Sbjct: 543 GGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSG 592



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           G  G G GG+G  G  YG G GS     YG G GG G
Sbjct: 516 GSRGGGGGGYGSGGSSYGSGGGS-----YGSGGGGGG 547



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 16  GGFGGWGYGYGCGYGSFRRLGY-GCGYGGYGFSCCRPLYYGGYGFSAF 62
           GG  G G+G G G G F   G+ G G+GG G         GG GF  F
Sbjct: 83  GGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGI--------GGGGFGGF 122



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           GG  YG GG GG    YG G  S    GY  G GG G
Sbjct: 562 GGGSYGSGGGGGGHGSYGSGSSSG---GYRGGSGGGG 595



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 5/32 (15%)

Query: 14  GYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           G G  GG G GYG G  S     YG G G YG
Sbjct: 514 GGGSRGGGGGGYGSGGSS-----YGSGGGSYG 540



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 6   SYYGGLGYGYGGFGGWG----YGYGCGYGSFRRLGYGCGYGGYGFS 47
           S YG  G  YG  GG G    YG G   G +R    G G GG G S
Sbjct: 557 SSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRG---GSGGGGGGSS 599


>gi|4505487 occludin [Homo sapiens]
          Length = 522

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 24/38 (63%), Gaps = 8/38 (21%)

Query: 9   GGLGYGYG--GFGGWGYGYGCGYGSFRRLGYGCGYGGY 44
           G +GY YG  GFG +G GYG GY      GYG GYGGY
Sbjct: 100 GSVGYPYGGSGFGSYGSGYGYGY------GYGYGYGGY 131



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 14/50 (28%)

Query: 12  GYG---YGGFGGWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYGGY 57
           GYG    GG  G+ YG G G+GS+   G G GYG GYG+       YGGY
Sbjct: 92  GYGTSLLGGSVGYPYG-GSGFGSY---GSGYGYGYGYGYG------YGGY 131



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 5/28 (17%)

Query: 2   SYYRSYYGGLGYGYGGFGGWGYGYGCGY 29
           S + SY  G GYGYG    +GYGYG GY
Sbjct: 109 SGFGSYGSGYGYGYG----YGYGYG-GY 131


>gi|119395754 keratin 5 [Homo sapiens]
          Length = 590

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 4   YRSYYG---GLGYGYGGFGGWGYGYGCGYGSFRRL----GYGCGYGGYGFSCCRP 51
           +R+ +G   G GYG+GG  G G+G+G G G    L    G+G G+GG GF  C P
Sbjct: 83  FRNRFGAGAGGGYGFGGGAGSGFGFGGGAGGGFGLGGGAGFGGGFGGPGFPVCPP 137



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 7   YYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFSA 61
           Y GGLG G GG  G G   G     +     G G GG        L  GG GFSA
Sbjct: 508 YGGGLGGGLGGGLGGGLAGGSSGSYYSSSSGGVGLGG-------GLSVGGSGFSA 555



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 2   SYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFS 47
           SYY S  GG+G G    GG   G G G+ +    G G G+G  G S
Sbjct: 531 SYYSSSSGGVGLG----GGLSVG-GSGFSASSGRGLGVGFGSGGGS 571



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 22  GYGYGCGYGSFRRLGYGCGYGG 43
           GYG G GYG     G G G GG
Sbjct: 501 GYGSGSGYGGGLGGGLGGGLGG 522


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 28/59 (47%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 5   RSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFSAFY 63
           R  YGG   GY GFGG G  YG G G   R GYG G  GYG         GGYG    Y
Sbjct: 257 RGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQ------GGGYGGGGGY 309



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 28/55 (50%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 9   GGLGYGYGG-FGGWGYGYGCGYGSFRRLGYGCGYGGY-GFSCCRPLYYGGYGFSA 61
           GG  +G GG FGG G GYG G G  R   YG G GGY GF      Y GG G+S+
Sbjct: 233 GGGNFGRGGNFGGRG-GYGGGGGGSRG-SYGGGDGGYNGFGGDGGNYGGGPGYSS 285



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 5   RSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGY--GCGYGGYG 45
           R  YGG G GYG  GG GYG G GY  +   G   G  YGG G
Sbjct: 286 RGGYGGGGPGYGNQGG-GYGGGGGYDGYNEGGNFGGGNYGGGG 327



 Score = 33.1 bits (74), Expect = 0.049
 Identities = 18/36 (50%), Positives = 20/36 (55%)

Query: 10  GLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           G G G G F G G  +G G G+F R G   G GGYG
Sbjct: 215 GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYG 250



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 24/74 (32%)

Query: 9   GGLGYG-----YGG------------FGGWGYGYGCGYGSF------RRLGYGCGYGG-Y 44
           GG GYG     YGG            FGG  YG G  Y  F      ++  YG   GG +
Sbjct: 292 GGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSF 351

Query: 45  GFSCCRPLYYGGYG 58
           G       Y GGYG
Sbjct: 352 GGRSSGSPYGGGYG 365



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 16  GGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           G FGG G  +G G     R GYG G GG      R  Y GG G
Sbjct: 228 GNFGGGGGNFGRGGNFGGRGGYGGGGGG-----SRGSYGGGDG 265



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 8   YGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLY--YGGYG 58
           +GG G   GG GG    YG G G +   G+G   G YG     P Y   GGYG
Sbjct: 243 FGGRGGYGGGGGGSRGSYGGGDGGYN--GFGGDGGNYGGG---PGYSSRGGYG 290



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 8/32 (25%)

Query: 16  GGFGGWGYG--YGCGYGSFRRLGYGCGYGGYG 45
           G FGG   G  YG GYGS      G G GGYG
Sbjct: 349 GSFGGRSSGSPYGGGYGS------GGGSGGYG 374


>gi|31791006 keratin associated protein 13-2 [Homo sapiens]
          Length = 175

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 6   SYYGGLGYGYGGFGGWGYG------YGCGYGSFRRLGYG-CGYG--GYGFSCCRPLY 53
           +Y G LG+G       GYG       GCG    R LGYG CG+   GYG   CRP Y
Sbjct: 95  TYSGSLGFGSSSCRSLGYGSRSCYSVGCGSSGVRSLGYGSCGFPSLGYGSGFCRPTY 151


>gi|109452587 family with sequence similarity 98, member B isoform 1
           [Homo sapiens]
          Length = 433

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 25/50 (50%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           GG G G GG GGWG G G G G F+  G   G GGYG         GGYG
Sbjct: 364 GGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGR-------GGYG 406



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 22/40 (55%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 5   RSYYGGLGYGYGGFGGWG-YGYGCGYGSFRRLGYGCGYGG 43
           R  YGG G GYGG GG+G  GYG  YG     G G G GG
Sbjct: 390 RGDYGGRG-GYGGRGGYGGRGYGDPYGGGGGGGGGGGGGG 428



 Score = 33.5 bits (75), Expect = 0.038
 Identities = 19/37 (51%), Positives = 21/37 (56%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           GG G G  G GG G G G G G   R G+G G GG+G
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWG 367



 Score = 33.5 bits (75), Expect = 0.038
 Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           GG G G GG+GG G G+G G G     G G G G  GF       YGG G
Sbjct: 350 GGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGD--YGGRG 397



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 14  GYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           G GG+GG G   G GYG     G G G GG G
Sbjct: 395 GRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 5   RSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           R  +GG G G G  GG G G   G+G     G G G+GG G
Sbjct: 335 RGGWGGGGGGGGRGGGGGGGGRGGWG-----GGGGGWGGGG 370


>gi|31791012 keratin associated protein 22-1 [Homo sapiens]
          Length = 48

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 15/63 (23%)

Query: 1  MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGFS 60
          MS+  +Y+GG GY  GG G                 YGCG  GYG++C  P  Y    FS
Sbjct: 1  MSFDNNYHGGQGYAKGGLG---------------CSYGCGLSGYGYACYCPWCYERSWFS 45

Query: 61 AFY 63
            +
Sbjct: 46 GCF 48


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 5   RSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           R + G  G GY   GG+G G+G G G     GYG G+GG+G
Sbjct: 95  RGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFG 135



 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 9   GGLGYGYGGF--GGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           GG G G+GG   GG+G GYG G+G F   G G G G  G
Sbjct: 109 GGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGG 147



 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 12/59 (20%)

Query: 8   YGGLGYGYGGFGGWGY----GYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYGGYGFSA 61
           +GG   G+GG  G GY    G+G G+G     G+G GYG G+G        +GG+G  A
Sbjct: 90  FGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFG-------GFGGFGGGA 141



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 2   SYYRSYYGGLGYGY------GGFGGWGYGYG--CGYGSFRRLGYGCGYG---GYGFSCCR 50
           S+  SY GG G G+      GGFGG   G+G   G G     G+G G+G   G GF    
Sbjct: 68  SFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGY 127

Query: 51  PLYYGGYG 58
              +GG+G
Sbjct: 128 GSGFGGFG 135



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 26/58 (44%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 2   SYYRSYYGGLGYGYGGFG-GWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           SY R   GG G  YGG G G GYG G G        YG G G  G S       GGYG
Sbjct: 484 SYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGS------GGGYG 535



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYGF 59
           GG G G+ G  G  YG G G G     GYG G G  G S     + GG GF
Sbjct: 544 GGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGS--GGSHGGGSGF 592



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 6   SYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGG 43
           +Y GG G G G  GG+G G G   GS    G G G+GG
Sbjct: 557 NYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGG 594



 Score = 33.1 bits (74), Expect = 0.049
 Identities = 21/50 (42%), Positives = 22/50 (44%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           GG G  YGG  G G G G GYG     G+  G GG         Y GG G
Sbjct: 514 GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSG 563



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGG 43
           GG G G G  GG G  YG G GS    G G GYGG
Sbjct: 504 GGYGGGSGSRGGSGGSYGGGSGSGG--GSGGGYGG 536



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 14  GYGGFGGWGYGYGCGYG---SFRRLGYGCGYGGYGFSCCRPLYY---GGYG 58
           G GG G +GY YG G G   S   LG G G G  GF       Y   GG+G
Sbjct: 62  GRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFG 112



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 10/45 (22%)

Query: 8   YGGLGYGYGGFG---------GWGYGYGCGYGSFRRLGYGCGYGG 43
           YGG G G GG+G         G  YG G G G     GYG G GG
Sbjct: 497 YGGGGSG-GGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGG 540



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 10  GLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           G GYG G  GG   G G G+       YG G G  G S       GGYG
Sbjct: 531 GGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGS------GGGYG 573



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/37 (43%), Positives = 17/37 (45%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           G +G G  G  G  YG G   GS    G G   GGYG
Sbjct: 471 GKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYG 507



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 14  GYGGFGGWGYGYGCGY-----GSFRRLGYGCGYGG 43
           G GG GG G  YG G      GS+   G G GYGG
Sbjct: 474 GLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGG 508



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 7   YYGGLGYGY--GGFGGWGYGYGCGYGSFRRLGYGCGYGGYG 45
           Y GG G G+  G  GG   G G  YG     G G G GGYG
Sbjct: 534 YGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSG-GGYG 573



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 26/63 (41%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 2  SYYRSYYGGLGYGYGGFGGW-GYGYG----CGYGSFRRLGYGCGYG-GYGFSCCRPLYYG 55
          SY R    G G G G F    GYG G    CG G     GY  G G G GFS       G
Sbjct: 31 SYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASS--LGG 88

Query: 56 GYG 58
          G+G
Sbjct: 89 GFG 91



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 9   GGLGYGYGGFGGWG--YGYGCGYGSFRRLGYGCGY------GGYG 45
           GG G G G  GG G  +G G G+G      YG G       GGYG
Sbjct: 570 GGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYG 614



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/35 (45%), Positives = 16/35 (45%)

Query: 9   GGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGG 43
           GG G G GG    G G G   GS    G G G GG
Sbjct: 532 GGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGG 566


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 28/59 (47%), Positives = 30/59 (50%), Gaps = 14/59 (23%)

Query: 9   GGLGYGYGGFGG-----WGYGYGC----GYGSFRRLGYGCGYGGYGFSCCRPLYYGGYG 58
           G  G G GG GG     W  GYG     GYG   + GYG GYGGY +S   P  Y GYG
Sbjct: 251 GNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGY--QQGYGPGYGGYDYS---PYGYYGYG 304



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 14  GYGGFGGWGYGY----GCGYGSFRRLGYG-CGYG-GYGFS 47
           GYG +   GYGY    G GYG +    YG  GYG GY +S
Sbjct: 271 GYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYS 310



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 2   SYYRSYYGGLGYGYGGFGGWGYGY-GCGYGSFRRLGYGCGY 41
           S+ + Y      GYG   G+G GY G  Y  +   GYG GY
Sbjct: 267 SWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGY 307



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 2   SYYRSYYG---GLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFSCCRPLYYGGY 57
           +Y+   YG   G G GYGG+    YGY   YG      Y  G   YG S  R  +   Y
Sbjct: 274 NYWNQGYGYQQGYGPGYGGYDYSPYGY---YGYGPGYDYSQGSTNYGKSQRRGGHQNNY 329


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.161    0.608 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,132,759
Number of Sequences: 37866
Number of extensions: 146936
Number of successful extensions: 2258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 821
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.