Guide to the Human Genome
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Name: KRTAP13-1 Sequence: fasta or formatted (172aa) NCBI GI: 109288006
Description:

keratin associated protein 13-1

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.2          2           1
 C cysteine           12.2         21           2
 D aspartate           0.6          1           1
 E glutamate           1.2          2           1
 F phenylalanine       4.1          7           1
 G glycine            13.4         23           2
 H histidine           0.6          1           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             6.4         11           2
 M methionine          0.6          1           1
 N asparagine          1.7          3           1
 P proline             5.8         10           1
 Q glutamine           4.7          8           2
 R arginine            5.8         10           1
 S serine             22.7         39           3
 T threonine           6.4         11           2
 V valine              2.3          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            9.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 13-1 
KRTAP13-2             0.883   keratin associated protein 13-2 
KRTAP13-4             0.638   keratin associated protein 13-4 
KRTAP13-3             0.621   keratin associated protein 13-3 
KRTAP15-1             0.351   keratin associated protein 15-1 
KRTAP11-1             0.195   keratin associated protein 11-1 
KRTAP4-2              0.106   keratin associated protein 4-2 
KRTAP9-2              0.106   keratin associated protein 9.2 
KRTAP26-1             0.106   keratin associated protein 26-1 
KRTAP4-9              0.103   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.103   keratin associated protein 4-9 
KRTAP4-12             0.103   keratin associated protein 4-12 
KRTAP4-8              0.100   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.100   PREDICTED: similar to keratin associated protein 4-...
LOC728341             0.100   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP9-3              0.097   keratin associated protein 9.3 
KRTAP19-5             0.097   keratin associated protein 19-5 
KRTAP1-1              0.097   keratin associated protein 1-1 
KRTAP4-7              0.095   keratin associated protein 4-7 
KRTAP4-7              0.095   PREDICTED: keratin associated protein 4-7 
KRTAP4-8              0.095   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.095   PREDICTED: similar to keratin associated protein 4-...
KRTAP5-3              0.089   keratin associated protein 5-3 
KRTAP4-1              0.089   keratin associated protein 4-1 
KRTAP23-1             0.089   keratin associated protein 23-1 
LOC728318             0.089   PREDICTED: hypothetical protein 
KRTAP9-8              0.089   keratin associated protein 9.8 
KRTAP4-3              0.089   keratin associated protein 4-3 
KRTAP12-2             0.089   keratin associated protein 12-2 
KRTAP9-9              0.089   keratin associated protein 9-9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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