Guide to the Human Genome
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Name: KRTAP20-3 Sequence: fasta or formatted (44aa) NCBI GI: 189303554
Description:

keratin associated protein 20-3

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          1           1
 C cysteine            9.1          4           1
 D aspartate           4.5          2           1
 E glutamate           0.0          0           0
 F phenylalanine       4.5          2           1
 G glycine            25.0         11           2
 H histidine           0.0          0           0
 I isoleucine          4.5          2           1
 K lysine              2.3          1           1
 L leucine             4.5          2           1
 M methionine          2.3          1           1
 N asparagine          2.3          1           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            4.5          2           1
 S serine              6.8          3           1
 T threonine           2.3          1           1
 V valine              2.3          1           1
 W tryptophan          2.3          1           1
 Y tyrosine           20.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 20-3 
KRTAP19-5             0.317   keratin associated protein 19-5 
KRTAP19-8             0.317   keratin associated protein 19-8 
KRTAP19-7             0.268   keratin associated protein 19-7 
KRTAP19-3             0.256   keratin associated protein 19-3 
KRTAP19-4             0.256   keratin associated protein 19-4 
KRTAP6-2              0.244   keratin associated protein 6-2 
KRTAP20-2             0.220   keratin associated protein 20-2 
KRTAP19-6             0.207   keratin associated protein 19-6 
KRTAP19-1             0.195   keratin associated protein 19-1 
KRTAP6-1              0.195   keratin associated protein 6-1 
KRTAP6-3              0.183   keratin associated protein 6-3 
KRTAP20-1             0.171   keratin associated protein 20-1 
LOC731932             0.159   PREDICTED: hypothetical protein 
LOC731932             0.159   PREDICTED: hypothetical protein 
LOC731932             0.159   PREDICTED: hypothetical protein 
LOC647262             0.122   PREDICTED: hypothetical protein 
KRTAP21-2             0.122   keratin associated protein 21-2 
KRTAP21-1             0.085   keratin associated protein 21-1 
LOC100292523          0.085   PREDICTED: similar to Keratin-associated protein 22...
LOC100291010          0.085   PREDICTED: hypothetical protein XP_002348098 
LOC100288287          0.085   PREDICTED: hypothetical protein XP_002343781 
KRT77                 0.061   keratin 77 
KRTAP22-1             0.037   keratin associated protein 22-1 
KRTAP13-4             0.024   keratin associated protein 13-4 
OCLN                  0.012   occludin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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