Guide to the Human Genome
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Name: FAM89B Sequence: fasta or formatted (154aa) NCBI GI: 149192853
Description:

family with sequence similarity 89, member B isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {189aa} family with sequence similarity 89, member B isoform 1
alt prot {176aa} family with sequence similarity 89, member B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         24           3
 C cysteine            1.3          2           1
 D aspartate           1.9          3           1
 E glutamate           3.9          6           1
 F phenylalanine       0.6          1           1
 G glycine            14.3         22           2
 H histidine           1.9          3           1
 I isoleucine          1.3          2           1
 K lysine              0.6          1           1
 L leucine            13.0         20           2
 M methionine          1.3          2           1
 N asparagine          3.2          5           1
 P proline            14.3         22           2
 Q glutamine           1.9          3           1
 R arginine            8.4         13           2
 S serine              5.8          9           1
 T threonine           1.3          2           1
 V valine              7.8         12           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 89, member B isofor... 
FAM89B                0.604   family with sequence similarity 89, member B isoform...
FAM89B                0.597   family with sequence similarity 89, member B isofor...
FAM89A                0.198   family with sequence similarity 89, member A 
TAF4                  0.052   TBP-associated factor 4 
GLTSCR1               0.049   glioma tumor suppressor candidate region gene 1 [Ho...
SAMD1                 0.045   sterile alpha motif domain containing 1 
INSM2                 0.038   insulinoma-associated protein IA-6 
HES3                  0.035   hairy and enhancer of split 3 
IRX3                  0.031   iroquois homeobox 3 
LOC100290973          0.031   PREDICTED: hypothetical protein XP_002346843 
AMOT                  0.031   angiomotin isoform 2 
AMOT                  0.031   angiomotin isoform 1 
RBM42                 0.028   RNA binding motif protein 42 
CDKN2A                0.028   cyclin-dependent kinase inhibitor 2A isoform 4 [Homo...
SBK1                  0.028   SH3-binding kinase 1 
SHANK1                0.028   SH3 and multiple ankyrin repeat domains 1 
LOC100289205          0.024   PREDICTED: hypothetical protein 
LOC100289205          0.024   PREDICTED: hypothetical protein XP_002343850 
FAM123A               0.024   hypothetical protein LOC219287 isoform 1 
WNK2                  0.024   WNK lysine deficient protein kinase 2 
NRG1                  0.024   neuregulin 1 isoform GGF2 
LOC100131102          0.024   PREDICTED: hypothetical protein 
LOC100131102          0.024   PREDICTED: hypothetical protein 
ARID1A                0.024   AT rich interactive domain 1A isoform a 
ARID1A                0.024   AT rich interactive domain 1A isoform b 
LOC255783             0.024   hypothetical protein LOC255783 
LOC100129786          0.021   PREDICTED: hypothetical protein LOC100129786 
LOC100128074          0.021   PREDICTED: hypothetical protein 
LOC100129786          0.021   PREDICTED: hypothetical protein LOC100129786 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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