Guide to the Human Genome
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Name: LOC255783 Sequence: fasta or formatted (142aa) NCBI GI: 30425446
Description:

hypothetical protein LOC255783

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         19           3
 C cysteine            3.5          5           1
 D aspartate           1.4          2           1
 E glutamate           3.5          5           1
 F phenylalanine       0.7          1           1
 G glycine            12.0         17           3
 H histidine           0.0          0           0
 I isoleucine          0.7          1           1
 K lysine              0.0          0           0
 L leucine             9.9         14           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            17.6         25           2
 Q glutamine           2.8          4           1
 R arginine           12.0         17           4
 S serine              8.5         12           1
 T threonine           2.8          4           1
 V valine              6.3          9           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.8          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC255783 
PRR12                 0.062   proline rich 12 
TAF4                  0.058   TBP-associated factor 4 
RLTPR                 0.055   RGD motif, leucine rich repeats, tropomodulin domain...
RFX1                  0.055   regulatory factor X1 
GRIN2D                0.055   N-methyl-D-aspartate receptor subunit 2D precursor ...
HCN2                  0.055   hyperpolarization activated cyclic nucleotide-gated...
HOXD11                0.051   homeobox D11 
EIF3F                 0.051   eukaryotic translation initiation factor 3, subunit 5...
WBP11                 0.051   WW domain binding protein 11 
VASP                  0.051   vasodilator-stimulated phosphoprotein 
UBE2O                 0.051   ubiquitin-conjugating enzyme E2O 
ACR                   0.051   acrosin precursor 
MANEAL                0.051   mannosidase, endo-alpha-like isoform 3 
MANEAL                0.051   mannosidase, endo-alpha-like isoform 1 
LOC645529             0.051   PREDICTED: similar to Putative acrosin-like proteas...
TTLL10                0.051   tubulin tyrosine ligase-like family, member 10 isof...
SETD1A                0.047   SET domain containing 1A 
ATXN2                 0.047   ataxin 2 
LOC389333             0.047   hypothetical protein LOC389333 
MAPK7                 0.047   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.047   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.047   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.047   mitogen-activated protein kinase 7 isoform 2 
DIAPH2                0.044   diaphanous 2 isoform 12C 
DIAPH2                0.044   diaphanous 2 isoform 156 
NACA                  0.044   nascent polypeptide-associated complex alpha subuni...
DRD4                  0.044   dopamine receptor D4 
LOC100132234          0.044   PREDICTED: hypothetical protein LOC100132234 
LOC100292723          0.044   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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