Guide to the Human Genome
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Name: LOC100128074 Sequence: fasta or formatted (365aa) NCBI GI: 239750101
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {381aa} PREDICTED: hypothetical protein
alt prot {350aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         42           3
 C cysteine            1.4          5           1
 D aspartate           2.5          9           1
 E glutamate           4.4         16           1
 F phenylalanine       0.5          2           1
 G glycine            12.3         45           2
 H histidine           6.3         23           1
 I isoleucine          1.4          5           1
 K lysine              1.4          5           1
 L leucine             9.9         36           4
 M methionine          0.3          1           1
 N asparagine          0.5          2           1
 P proline            14.2         52           5
 Q glutamine           7.9         29           3
 R arginine            9.6         35           2
 S serine              4.1         15           1
 T threonine           3.0         11           3
 V valine              7.7         28           2
 W tryptophan          0.5          2           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128074          0.904   PREDICTED: hypothetical protein 
LOC100128074          0.880   PREDICTED: hypothetical protein 
CRTC1                 0.037   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.037   mucoepidermoid carcinoma translocated 1 isoform 1 [...
LMOD2                 0.037   leiomodin 2 (cardiac) 
PRB3                  0.037   proline-rich protein BstNI subfamily 3 precursor [H...
FMN1                  0.034   formin 1 
SYN1                  0.034   synapsin I isoform Ia 
SYN1                  0.034   synapsin I isoform Ib 
USP51                 0.034   ubiquitin specific protease 51 
PRR12                 0.034   proline rich 12 
GPR153                0.034   G protein-coupled receptor 153 
FMNL2                 0.033   formin-like 2 
PRB4                  0.033   proline-rich protein BstNI subfamily 4 precursor [Ho...
ZC3H18                0.033   zinc finger CCCH-type containing 18 
BAI1                  0.031   brain-specific angiogenesis inhibitor 1 precursor [...
DIAPH1                0.031   diaphanous 1 isoform 2 
DIAPH1                0.031   diaphanous 1 isoform 1 
WAS                   0.031   Wiskott-Aldrich syndrome protein 
LOC100293662          0.031   PREDICTED: hypothetical protein 
LOC100289444          0.031   PREDICTED: hypothetical protein 
LOC100289444          0.031   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.031   PREDICTED: hypothetical protein 
PCLO                  0.031   piccolo isoform 2 
PCLO                  0.031   piccolo isoform 1 
SF3B4                 0.030   splicing factor 3b, subunit 4 
LOC100292845          0.030   PREDICTED: hypothetical protein 
LOC100289230          0.030   PREDICTED: hypothetical protein XP_002342600 
TAF4                  0.030   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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