Guide to the Human Genome
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Name: FAM89B Sequence: fasta or formatted (189aa) NCBI GI: 149192858
Description:

family with sequence similarity 89, member B isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {154aa} family with sequence similarity 89, member B isoform 3
alt prot {176aa} family with sequence similarity 89, member B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         23           2
 C cysteine            2.1          4           1
 D aspartate           7.9         15           2
 E glutamate           4.2          8           2
 F phenylalanine       1.1          2           1
 G glycine             8.5         16           2
 H histidine           3.2          6           1
 I isoleucine          1.6          3           1
 K lysine              1.1          2           1
 L leucine            14.3         27           2
 M methionine          1.6          3           1
 N asparagine          2.6          5           1
 P proline            10.6         20           3
 Q glutamine           4.8          9           1
 R arginine            6.9         13           2
 S serine             10.6         20           3
 T threonine           1.1          2           1
 V valine              2.1          4           1
 W tryptophan          1.6          3           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 89, member B isofor... 
FAM89B                0.905   family with sequence similarity 89, member B isoform...
FAM89B                0.469   family with sequence similarity 89, member B isofor...
FAM89A                0.297   family with sequence similarity 89, member A 
C9orf150              0.030   hypothetical protein LOC286343 
CDKN2A                0.022   cyclin-dependent kinase inhibitor 2A isoform 4 [Homo...
LOC100289205          0.019   PREDICTED: hypothetical protein 
LOC100289205          0.019   PREDICTED: hypothetical protein XP_002343850 
PDZD2                 0.019   PDZ domain containing 2 
LOC100129786          0.016   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          0.016   PREDICTED: hypothetical protein LOC100129786 
LOC100287587          0.016   PREDICTED: hypothetical protein XP_002343392 
LOC100129786          0.016   PREDICTED: hypothetical protein LOC100129786 
LPHN1                 0.016   latrophilin 1 isoform 1 precursor 
LPHN1                 0.016   latrophilin 1 isoform 2 precursor 
ONECUT3               0.016   one cut homeobox 3 
LOC100292482          0.016   PREDICTED: hypothetical protein 
MAGI2                 0.016   membrane associated guanylate kinase, WW and PDZ dom...
DACT2                 0.016   dapper, antagonist of beta-catenin, homolog 2 [Homo...
LOC100128074          0.014   PREDICTED: hypothetical protein 
LOC100128074          0.014   PREDICTED: hypothetical protein 
LOC100128074          0.014   PREDICTED: hypothetical protein 
LOC100287907          0.014   PREDICTED: hypothetical protein 
LOC100287907          0.014   PREDICTED: hypothetical protein XP_002343168 
CDC42EP1              0.014   CDC42 effector protein 1 
COL24A1               0.014   collagen, type XXIV, alpha 1 
YLPM1                 0.014   YLP motif containing 1 
MARCH9                0.014   membrane-associated RING-CH protein IX 
SMAD9                 0.014   SMAD family member 9 isoform a 
SMAD9                 0.014   SMAD family member 9 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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