Guide to the Human Genome
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Name: HES3 Sequence: fasta or formatted (186aa) NCBI GI: 66912172
Description:

hairy and enhancer of split 3

Referenced in:

Notch Pathway
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         16           2
 C cysteine            2.2          4           1
 D aspartate           2.7          5           2
 E glutamate           5.9         11           1
 F phenylalanine       1.1          2           1
 G glycine             9.1         17           2
 H histidine           1.1          2           1
 I isoleucine          1.6          3           1
 K lysine              4.3          8           2
 L leucine            13.4         25           4
 M methionine          1.6          3           1
 N asparagine          1.6          3           1
 P proline            12.9         24           3
 Q glutamine           4.3          8           1
 R arginine            8.6         16           2
 S serine             11.8         22           2
 T threonine           1.1          2           1
 V valine              4.8          9           1
 W tryptophan          2.2          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hairy and enhancer of split 3 
HES4                  0.151   hairy and enhancer of split 4 isoform 1 
HES4                  0.151   hairy and enhancer of split 4 isoform 2 
HES1                  0.148   hairy and enhancer of split 1 
HES5                  0.118   hairy and enhancer of split 5 
HES2                  0.115   hairy and enhancer of split homolog 2 
HES7                  0.098   hairy and enhancer of split 7 
HEY2                  0.070   hairy/enhancer-of-split related with YRPW motif 2 [Ho...
HES6                  0.064   hairy and enhancer of split 6 isoform b 
HEY1                  0.062   hairy/enhancer-of-split related with YRPW motif 1 i...
HES6                  0.062   hairy and enhancer of split 6 isoform a 
HEY1                  0.056   hairy/enhancer-of-split related with YRPW motif 1 i...
BHLHE41               0.050   basic helix-loop-helix domain containing, class B, 3...
BHLHE40               0.048   basic helix-loop-helix family, member e40 
BAHCC1                0.045   BAH domain and coiled-coil containing 1 
AGAP2                 0.042   centaurin, gamma 1 isoform PIKE-L 
SEZ6L2                0.042   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.042   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
NUP214                0.042   nucleoporin 214kDa 
HEYL                  0.042   hairy/enhancer-of-split related with YRPW motif-like ...
LOC100133405          0.042   PREDICTED: hypothetical protein 
FMNL3                 0.042   formin-like 3 isoform 2 
FMNL3                 0.042   formin-like 3 isoform 1 
LMTK3                 0.042   lemur tyrosine kinase 3 
PRDM2                 0.039   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.039   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.039   retinoblastoma protein-binding zinc finger protein i...
C9orf86               0.039   Rab-like GTP-binding protein 1 isoform 2 
ATXN2L                0.039   ataxin 2 related protein isoform B 
ATXN2L                0.039   ataxin 2 related protein isoform E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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