Guide to the Human Genome
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Name: LOC100290973 Sequence: fasta or formatted (106aa) NCBI GI: 239748977
Description:

PREDICTED: hypothetical protein XP_002346843

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6          7           2
 C cysteine            2.8          3           1
 D aspartate           0.9          1           1
 E glutamate           3.8          4           1
 F phenylalanine       1.9          2           1
 G glycine             8.5          9           2
 H histidine           0.0          0           0
 I isoleucine          4.7          5           1
 K lysine              4.7          5           1
 L leucine            16.0         17           4
 M methionine          4.7          5           1
 N asparagine          0.0          0           0
 P proline            19.8         21           3
 Q glutamine           0.9          1           1
 R arginine            2.8          3           1
 S serine              9.4         10           3
 T threonine           4.7          5           1
 V valine              3.8          4           1
 W tryptophan          3.8          4           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346843 
C6orf132              0.095   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.095   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.095   PREDICTED: hypothetical protein LOC647024 
FMN1                  0.090   formin 1 
MLL4                  0.085   myeloid/lymphoid or mixed-lineage leukemia 4 
RBM26                 0.080   RNA binding motif protein 26 
INF2                  0.080   inverted formin 2 isoform 2 
INF2                  0.080   inverted formin 2 isoform 1 
SETD1B                0.080   SET domain containing 1B 
PRR12                 0.075   proline rich 12 
ESX1                  0.070   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
DAAM2                 0.070   dishevelled associated activator of morphogenesis 2 ...
PCDH15                0.070   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.070   protocadherin 15 isoform CD1-1 precursor 
SNRPN                 0.070   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.070   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.070   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.070   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.070   small nuclear ribonucleoprotein polypeptide N 
FHOD1                 0.070   formin homology 2 domain containing 1 
FASLG                 0.070   fas ligand 
APBB1IP               0.070   amyloid beta (A4) precursor protein-binding, family ...
TAOK2                 0.070   TAO kinase 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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