Guide to the Human Genome
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Name: IRX3 Sequence: fasta or formatted (501aa) NCBI GI: 226371735
Description:

iroquois homeobox 3

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         80           9
 C cysteine            0.4          2           1
 D aspartate           4.6         23           3
 E glutamate           8.6         43           4
 F phenylalanine       2.2         11           1
 G glycine             9.4         47           2
 H histidine           1.8          9           1
 I isoleucine          1.6          8           2
 K lysine              3.6         18           2
 L leucine            10.2         51           2
 M methionine          0.8          4           1
 N asparagine          2.6         13           1
 P proline            12.4         62           3
 Q glutamine           2.6         13           1
 R arginine            5.0         25           3
 S serine              8.8         44           3
 T threonine           3.4         17           1
 V valine              2.6         13           1
 W tryptophan          1.0          5           1
 Y tyrosine            2.6         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iroquois homeobox 3 
IRX1                  0.305   iroquois homeobox protein 1 
IRX5                  0.199   iroquois homeobox protein 5 
IRX2                  0.196   iroquois homeobox 2 
IRX2                  0.196   iroquois homeobox 2 
IRX4                  0.193   iroquois homeobox 4 
IRX6                  0.179   iroquois homeobox protein 6 
MKX                   0.056   mohawk homeobox 
SETD1A                0.043   SET domain containing 1A 
ATN1                  0.041   atrophin-1 
ATN1                  0.041   atrophin-1 
HOXA7                 0.036   homeobox A7 
PKNOX2                0.035   PBX/knotted 1 homeobox 2 
RTN4                  0.033   reticulon 4 isoform B 
RTN4                  0.033   reticulon 4 isoform D 
RTN4                  0.033   reticulon 4 isoform A 
TGIF1                 0.032   TG-interacting factor isoform a 
TGIF1                 0.032   TG-interacting factor isoform c 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform c 
TGIF1                 0.032   TG-interacting factor isoform b 
PKNOX1                0.032   PBX/knotted 1 homeobox 1 
HOXC8                 0.031   homeobox C8 
SETD1B                0.031   SET domain containing 1B 
BAT2                  0.031   HLA-B associated transcript-2 
MNX1                  0.031   homeo box HB9 
CENPB                 0.030   centromere protein B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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