Guide to the Human Genome
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Name: LOC100129786 Sequence: fasta or formatted (210aa) NCBI GI: 169167301
Description:

PREDICTED: hypothetical protein LOC100129786

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: hypothetical protein LOC100129786
alt mRNA {210aa} PREDICTED: hypothetical protein LOC100129786
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         17           1
 C cysteine            0.0          0           0
 D aspartate           1.4          3           1
 E glutamate          11.4         24           3
 F phenylalanine       1.0          2           1
 G glycine             5.2         11           1
 H histidine           3.3          7           1
 I isoleucine          0.5          1           1
 K lysine              3.3          7           1
 L leucine             2.4          5           2
 M methionine          1.4          3           1
 N asparagine          3.8          8           1
 P proline            12.9         27           1
 Q glutamine           6.7         14           1
 R arginine           17.6         37           2
 S serine              9.0         19           1
 T threonine           9.0         19           2
 V valine              1.9          4           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          1.000   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          1.000   PREDICTED: hypothetical protein LOC100129786 
SRRM2                 0.083   splicing coactivator subunit SRm300 
LOC100286959          0.068   PREDICTED: hypothetical protein XP_002343921 
SRRM1                 0.068   serine/arginine repetitive matrix 1 
TULP1                 0.066   tubby like protein 1 
LOC100170229          0.061   hypothetical protein LOC100170229 
LOC100131202          0.056   PREDICTED: hypothetical protein 
POLR2A                0.056   DNA-directed RNA polymerase II A 
PRB4                  0.056   proline-rich protein BstNI subfamily 4 precursor [Ho...
PCLO                  0.054   piccolo isoform 2 
PCLO                  0.054   piccolo isoform 1 
ZAN                   0.054   zonadhesin isoform 3 
ZAN                   0.054   zonadhesin isoform 6 
MDC1                  0.051   mediator of DNA-damage checkpoint 1 
SPTY2D1               0.051   SPT2, Suppressor of Ty, domain containing 1 
C2orf16               0.051   hypothetical protein LOC84226 
SON                   0.049   SON DNA-binding protein isoform F 
SON                   0.049   SON DNA-binding protein isoform B 
MARVELD3              0.049   MARVEL domain containing 3 isoform 1 
MARVELD3              0.049   MARVEL domain containing 3 isoform 2 
LOC100288837          0.049   PREDICTED: hypothetical protein XP_002343931, parti...
NEFH                  0.046   neurofilament, heavy polypeptide 200kDa 
LOC643446             0.046   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.046   PREDICTED: similar to ribonucleic acid binding prot...
SPEG                  0.046   SPEG complex locus 
RNPS1                 0.046   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.046   RNA-binding protein S1, serine-rich domain 
PRG4                  0.046   proteoglycan 4 isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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