Guide to the Human Genome
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Name: LOC100289205 Sequence: fasta or formatted (252aa) NCBI GI: 239746791
Description:

PREDICTED: hypothetical protein XP_002343850

Not currently referenced in the text

Other entries for this name:
alt mRNA {252aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         32           2
 C cysteine            2.0          5           2
 D aspartate           4.0         10           3
 E glutamate           8.3         21           2
 F phenylalanine       1.2          3           2
 G glycine            11.9         30           2
 H histidine           2.0          5           1
 I isoleucine          1.6          4           1
 K lysine              0.8          2           1
 L leucine             9.9         25           2
 M methionine          0.8          2           1
 N asparagine          2.0          5           1
 P proline            10.7         27           3
 Q glutamine           4.8         12           2
 R arginine            8.7         22           3
 S serine              4.8         12           1
 T threonine           2.4          6           1
 V valine             10.3         26           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343850 
LOC100289205          1.000   PREDICTED: hypothetical protein 
NES                   0.029   nestin 
LOC100287524          0.027   PREDICTED: hypothetical protein XP_002342307 
FMNL1                 0.027   formin-like 1 
FMN2                  0.025   formin 2 
FOXD1                 0.025   forkhead box D1 
MEF2A                 0.023   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.023   myocyte enhancer factor 2A isoform 3 
MEF2A                 0.023   myocyte enhancer factor 2A isoform 2 
TAF4                  0.023   TBP-associated factor 4 
WNK2                  0.021   WNK lysine deficient protein kinase 2 
RXRB                  0.021   retinoid X receptor, beta 
MEF2D                 0.021   myocyte enhancer factor 2D 
MLL4                  0.021   myeloid/lymphoid or mixed-lineage leukemia 4 
JPH2                  0.019   junctophilin 2 isoform 1 
PTPN23                0.019   protein tyrosine phosphatase, non-receptor type 23 [...
COL5A1                0.019   alpha 1 type V collagen preproprotein 
VASP                  0.019   vasodilator-stimulated phosphoprotein 
MEF2A                 0.016   myocyte enhancer factor 2A isoform 1 
BAT2                  0.016   HLA-B associated transcript-2 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.016   mitogen-activated protein kinase 7 isoform 2 
ACIN1                 0.016   apoptotic chromatin condensation inducer 1 
INF2                  0.016   inverted formin 2 isoform 2 
INF2                  0.016   inverted formin 2 isoform 1 
GSX2                  0.016   GS homeobox 2 
MAST4                 0.016   microtubule associated serine/threonine kinase fami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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