Guide to the Human Genome
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Name: LOC730060 Sequence: fasta or formatted (165aa) NCBI GI: 113426339
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {165aa} PREDICTED: hypothetical protein
alt mRNA {165aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.2         30           3
 C cysteine            0.6          1           1
 D aspartate           3.6          6           2
 E glutamate          11.5         19           2
 F phenylalanine       1.2          2           1
 G glycine            12.1         20           2
 H histidine           3.0          5           1
 I isoleucine          0.6          1           1
 K lysine              1.8          3           2
 L leucine             2.4          4           1
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            12.7         21           3
 Q glutamine           1.2          2           1
 R arginine           17.6         29           6
 S serine              4.8          8           1
 T threonine           3.0          5           1
 V valine              3.6          6           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730060             1.000   PREDICTED: hypothetical protein 
LOC730060             1.000   PREDICTED: hypothetical protein 
LOC100132767          0.360   PREDICTED: hypothetical protein 
LOC100132767          0.360   PREDICTED: hypothetical protein 
MAPK7                 0.069   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.069   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.069   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.069   mitogen-activated protein kinase 7 isoform 2 
LOC100287250          0.060   PREDICTED: hypothetical protein XP_002344493 
BAT2                  0.057   HLA-B associated transcript-2 
FLJ37078              0.057   hypothetical protein LOC222183 
C2orf55               0.057   hypothetical protein LOC343990 
SCAF1                 0.054   SR-related CTD-associated factor 1 
PHF23                 0.050   PHD finger protein 23 
ZNF367                0.044   zinc finger protein 367 
PYGO2                 0.044   pygopus homolog 2 
RANBP9                0.044   RAN binding protein 9 
LOC100293254          0.044   PREDICTED: hypothetical protein 
LOC100289377          0.044   PREDICTED: hypothetical protein 
LOC100289377          0.044   PREDICTED: hypothetical protein XP_002343119 
GPR153                0.044   G protein-coupled receptor 153 
SPTBN4                0.044   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
CREBZF                0.041   HCF-binding transcription factor Zhangfei 
PCNXL3                0.041   pecanex-like 3 
LMTK3                 0.041   lemur tyrosine kinase 3 
LOC100291533          0.038   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.038   PREDICTED: hypothetical protein XP_002342946 
PPP1R12C              0.038   protein phosphatase 1, regulatory subunit 12C 
MEX3C                 0.038   ring finger and KH domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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