Guide to the Human Genome
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Name: LOC100293012 Sequence: fasta or formatted (157aa) NCBI GI: 239752852
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         19           2
 C cysteine            2.5          4           1
 D aspartate           1.3          2           1
 E glutamate           8.3         13           3
 F phenylalanine       1.3          2           1
 G glycine            14.6         23           3
 H histidine           1.9          3           1
 I isoleucine          0.6          1           1
 K lysine              0.6          1           1
 L leucine             6.4         10           2
 M methionine          1.9          3           1
 N asparagine          3.2          5           1
 P proline             4.5          7           1
 Q glutamine           7.0         11           2
 R arginine           15.9         25           2
 S serine              3.8          6           1
 T threonine           5.1          8           2
 V valine              4.5          7           1
 W tryptophan          3.8          6           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
APOB48R               0.042   apolipoprotein B48 receptor 
ACIN1                 0.026   apoptotic chromatin condensation inducer 1 
LOC100293922          0.023   PREDICTED: hypothetical protein 
LOC100291358          0.023   PREDICTED: hypothetical protein XP_002347390 
SRRM2                 0.023   splicing coactivator subunit SRm300 
GSG2                  0.023   haspin 
INCENP                0.023   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.023   inner centromere protein antigens 135/155kDa isofor...
LOC100293486          0.016   PREDICTED: similar to hCG2041452 
LOC100291379          0.016   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.016   PREDICTED: hypothetical protein XP_002342392 
LOC100293513          0.016   PREDICTED: hypothetical protein 
LOC100292572          0.016   PREDICTED: hypothetical protein 
LOC100291129          0.016   PREDICTED: hypothetical protein XP_002347815 
LOC100288181          0.016   PREDICTED: hypothetical protein 
LOC100288194          0.016   PREDICTED: hypothetical protein XP_002343605 
LOC100288181          0.016   PREDICTED: hypothetical protein XP_002342920 
LOC100294343          0.016   PREDICTED: hypothetical protein XP_002344111 
TRIOBP                0.016   TRIO and F-actin binding protein isoform 6 
ZFYVE28               0.016   zinc finger, FYVE domain containing 28 
LOC100292383          0.016   PREDICTED: hypothetical protein 
LOC100293438          0.016   PREDICTED: hypothetical protein 
BCLAF1                0.016   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.016   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.016   BCL2-associated transcription factor 1 isoform 1 [Hom...
RGS14                 0.016   regulator of G-protein signalling 14 
LOC100292370          0.013   PREDICTED: hypothetical protein 
LOC731605             0.013   PREDICTED: similar to BCL2-associated transcription...
SPTBN4                0.013   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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