Guide to the Human Genome
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Name: C10orf112 Sequence: fasta or formatted (1817aa) NCBI GI: 239749752
Description:

PREDICTED: chromosome 10 open reading frame 112

Referenced in:

Lysosomes and Related Organelles
Additional Genes in Development

Other entries for this name:
alt prot [1817aa] PREDICTED: chromosome 10 open reading frame 112
alt prot [1542aa] PREDICTED: chromosome 10 open reading frame 112
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        101           2
 C cysteine            4.7         86           1
 D aspartate           6.8        124           2
 E glutamate           5.4         98           3
 F phenylalanine       5.0         91           1
 G glycine             6.8        123           2
 H histidine           3.3         60           2
 I isoleucine          5.2         94           2
 K lysine              4.7         85           2
 L leucine             8.6        157           3
 M methionine          1.4         26           1
 N asparagine          4.4         80           2
 P proline             4.9         89           2
 Q glutamine           4.1         75           2
 R arginine            4.3         78           5
 S serine             10.1        183           3
 T threonine           5.9        108           2
 V valine              4.3         78           1
 W tryptophan          2.3         42           1
 Y tyrosine            2.1         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: chromosome 10 open reading frame 112 [Ho... 
C10orf112             0.997   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.841   PREDICTED: chromosome 10 open reading frame 112 [Ho...
MAMDC4                0.045   apical early endosomal glycoprotein precursor [Homo...
MAMDC2                0.031   MAM domain containing 2 
MDGA1                 0.026   MAM domain containing glycosylphosphatidylinositol a...
MDGA2                 0.024   MAM domain containing 1 isoform 1 
MDGA2                 0.024   MAM domain containing 1 isoform 2 
LRP2                  0.020   low density lipoprotein-related protein 2 
HSPG2                 0.020   heparan sulfate proteoglycan 2 
PRSS7                 0.019   enterokinase precursor 
VLDLR                 0.019   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.019   very low density lipoprotein receptor isoform a [Hom...
LRP1B                 0.019   low density lipoprotein-related protein 1B precursor...
LRP5                  0.018   low density lipoprotein receptor-related protein 5 ...
SORL1                 0.018   sortilin-related receptor containing LDLR class A rep...
LRP8                  0.018   low density lipoprotein receptor-related protein 8 i...
LRP1                  0.017   low density lipoprotein-related protein 1 
LRP8                  0.017   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.017   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.017   low density lipoprotein receptor-related protein 8 i...
LRP4                  0.017   low density lipoprotein receptor-related protein 4 ...
LRP6                  0.016   low density lipoprotein receptor-related protein 6 ...
LDLR                  0.016   low density lipoprotein receptor precursor 
CORIN                 0.015   corin 
SSPO                  0.015   SCO-spondin 
ZAN                   0.015   zonadhesin isoform 3 
ZAN                   0.015   zonadhesin isoform 6 
CD320                 0.014   8D6 antigen 
NRP1                  0.013   neuropilin 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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