Guide to the Human Genome
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Name: BMP1 Sequence: fasta or formatted (986aa) NCBI GI: 5453579
Description:

bone morphogenetic protein 1 isoform 3 precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [730aa] bone morphogenetic protein 1 isoform 1 precursor
alt prot [823aa] bone morphogenetic protein 1 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         48           3
 C cysteine            4.2         41           2
 D aspartate           6.9         68           2
 E glutamate           6.5         64           3
 F phenylalanine       5.3         52           2
 G glycine             8.7         86           3
 H histidine           2.7         27           1
 I isoleucine          3.7         36           2
 K lysine              5.9         58           2
 L leucine             5.9         58           4
 M methionine          1.0         10           1
 N asparagine          3.2         32           2
 P proline             5.4         53           2
 Q glutamine           3.3         33           2
 R arginine            6.8         67           2
 S serine              8.1         80           3
 T threonine           5.2         51           1
 V valine              6.4         63           2
 W tryptophan          1.6         16           1
 Y tyrosine            4.4         43           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bone morphogenetic protein 1 isoform 3 precursor [Hom... 
TLL2                  0.763   tolloid-like 2 
TLL1                  0.754   tolloid-like 1 
BMP1                  0.708   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.707   bone morphogenetic protein 1 isoform 2 precursor [Hom...
CUBN                  0.147   cubilin 
CSMD1                 0.098   CUB and Sushi multiple domains 1 
CSMD2                 0.093   CUB and Sushi multiple domains 2 
CDCP2                 0.084   CUB domain containing protein 2 
CSMD3                 0.084   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.084   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.084   CUB and Sushi multiple domains 3 isoform 1 
MASP1                 0.071   mannan-binding lectin serine protease 1 isoform 3 [H...
MASP1                 0.071   mannan-binding lectin serine protease 1 isoform 2 pr...
MASP1                 0.071   mannan-binding lectin serine protease 1 isoform 1 pr...
PCOLCE                0.067   procollagen C-endopeptidase enhancer 
MFRP                  0.063   membrane frizzled-related protein 
PCOLCE2               0.062   procollagen C-endopeptidase enhancer 2 
NRP2                  0.061   neuropilin 2 isoform 3 precursor 
NRP2                  0.061   neuropilin 2 isoform 5 precursor 
NRP2                  0.061   neuropilin 2 isoform 1 precursor 
NRP2                  0.061   neuropilin 2 isoform 6 precursor 
NRP2                  0.061   neuropilin 2 isoform 4 precursor 
NRP2                  0.061   neuropilin 2 isoform 2 precursor 
MASP2                 0.060   mannan-binding lectin serine protease 2 isoform 1 pr...
C1R                   0.057   complement component 1, r subcomponent 
NRP1                  0.055   neuropilin 1 isoform c 
NRP1                  0.055   neuropilin 1 isoform b 
NRP1                  0.055   neuropilin 1 isoform a 
LOC100291777          0.055   PREDICTED: similar to DMBT1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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