Guide to the Human Genome
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Name: CDCP2 Sequence: fasta or formatted (449aa) NCBI GI: 72384339
Description:

CUB domain containing protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         28           2
 C cysteine            4.0         18           1
 D aspartate           3.6         16           1
 E glutamate           4.7         21           2
 F phenylalanine       5.6         25           2
 G glycine            10.2         46           2
 H histidine           4.5         20           2
 I isoleucine          2.0          9           1
 K lysine              2.2         10           1
 L leucine            11.1         50           5
 M methionine          1.6          7           1
 N asparagine          3.8         17           2
 P proline             8.9         40           4
 Q glutamine           3.1         14           1
 R arginine            3.1         14           2
 S serine              9.1         41           2
 T threonine           4.2         19           2
 V valine              6.5         29           2
 W tryptophan          1.6          7           1
 Y tyrosine            4.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUB domain containing protein 2 
TLL2                  0.214   tolloid-like 2 
TLL1                  0.210   tolloid-like 1 
CUBN                  0.196   cubilin 
BMP1                  0.186   bone morphogenetic protein 1 isoform 3 precursor [Hom...
BMP1                  0.168   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.159   bone morphogenetic protein 1 isoform 1 precursor [Hom...
PCOLCE2               0.144   procollagen C-endopeptidase enhancer 2 
PCOLCE                0.138   procollagen C-endopeptidase enhancer 
MFRP                  0.136   membrane frizzled-related protein 
NRP2                  0.120   neuropilin 2 isoform 3 precursor 
NRP2                  0.120   neuropilin 2 isoform 5 precursor 
NRP2                  0.120   neuropilin 2 isoform 1 precursor 
NRP2                  0.120   neuropilin 2 isoform 6 precursor 
NRP2                  0.120   neuropilin 2 isoform 4 precursor 
NRP2                  0.120   neuropilin 2 isoform 2 precursor 
LOC100291777          0.119   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.119   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.119   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.119   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.119   deleted in malignant brain tumors 1 isoform a precu...
NRP1                  0.112   neuropilin 1 isoform c 
NRP1                  0.112   neuropilin 1 isoform b 
NRP1                  0.112   neuropilin 1 isoform a 
CSMD1                 0.102   CUB and Sushi multiple domains 1 
CSMD3                 0.097   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.097   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.097   CUB and Sushi multiple domains 3 isoform 1 
CSMD2                 0.092   CUB and Sushi multiple domains 2 
ST14                  0.081   matriptase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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