Guide to the Human Genome
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Name: CUZD1 Sequence: fasta or formatted (607aa) NCBI GI: 30520377
Description:

CUB and zona pellucida-like domains 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         25           1
 C cysteine            3.3         20           1
 D aspartate           4.6         28           2
 E glutamate           5.3         32           2
 F phenylalanine       5.4         33           2
 G glycine             4.4         27           2
 H histidine           1.8         11           1
 I isoleucine          6.6         40           2
 K lysine              4.8         29           1
 L leucine             8.1         49           2
 M methionine          1.6         10           1
 N asparagine          6.3         38           2
 P proline             4.1         25           1
 Q glutamine           4.3         26           1
 R arginine            4.1         25           2
 S serine             12.0         73           4
 T threonine           7.4         45           2
 V valine              6.8         41           2
 W tryptophan          0.5          3           1
 Y tyrosine            4.4         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUB and zona pellucida-like domains 1 
LOC100291777          0.226   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.226   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.226   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.226   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.226   deleted in malignant brain tumors 1 isoform a precu...
PCOLCE                0.069   procollagen C-endopeptidase enhancer 
PCOLCE2               0.069   procollagen C-endopeptidase enhancer 2 
CUBN                  0.068   cubilin 
TLL1                  0.065   tolloid-like 1 
TLL2                  0.064   tolloid-like 2 
BMP1                  0.062   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.061   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.061   bone morphogenetic protein 1 isoform 3 precursor [Hom...
NRP1                  0.059   neuropilin 1 isoform c 
NRP1                  0.059   neuropilin 1 isoform b 
NRP1                  0.059   neuropilin 1 isoform a 
CDCP2                 0.059   CUB domain containing protein 2 
MFRP                  0.057   membrane frizzled-related protein 
ZP2                   0.056   zona pellucida glycoprotein 2 preproprotein 
OIT3                  0.055   oncoprotein-induced transcript 3 
NRP2                  0.055   neuropilin 2 isoform 3 precursor 
NRP2                  0.055   neuropilin 2 isoform 5 precursor 
NRP2                  0.055   neuropilin 2 isoform 1 precursor 
NRP2                  0.055   neuropilin 2 isoform 6 precursor 
NRP2                  0.055   neuropilin 2 isoform 4 precursor 
NRP2                  0.055   neuropilin 2 isoform 2 precursor 
CSMD3                 0.050   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.050   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.050   CUB and Sushi multiple domains 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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