COPA 4482

Name: COPA	Sequence: fasta or formatted (1224aa)		NCBI GI: 148536853
Description: coatomer protein complex, subunit alpha isoform 2		Referenced in: ER, Golgi, and the Secretory Pathway WD Repeat Proteins
Other entries for this name: alt prot [1233aa] coatomer protein complex, subunit alpha isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 85 2 C cysteine 2.2 27 1 D aspartate 6.3 77 2 E glutamate 5.8 71 2 F phenylalanine 4.0 49 2 G glycine 6.5 79 3 H histidine 2.9 36 2 I isoleucine 5.5 67 2 K lysine 6.8 83 2 L leucine 10.5 128 3 M methionine 1.9 23 2 N asparagine 4.5 55 2 P proline 4.4 54 2 Q glutamine 3.8 47 2 R arginine 5.5 67 2 S serine 5.0 61 2 T threonine 5.6 69 2 V valine 7.0 86 2 W tryptophan 1.7 21 1 Y tyrosine 3.2 39 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coatomer protein complex, subunit alpha isoform 2 [... COPA 0.997 coatomer protein complex, subunit alpha isoform 1 [... COPB2 0.101 coatomer protein complex, subunit beta 2 (beta prime)... PAFAH1B1 0.035 platelet-activating factor acetylhydrolase, isoform I... WDR51A 0.034 WD repeat domain 51A isoform 3 WDR51A 0.034 WD repeat domain 51A isoform 2 WDR51A 0.034 WD repeat domain 51A isoform 1 WDR38 0.033 WD repeat domain 38 WDR5 0.033 WD repeat domain 5 WDR5 0.033 WD repeat domain 5 WDR51B 0.032 WD repeat domain 51B WDR5B 0.031 WD repeat domain 5B WDR69 0.031 WD repeat domain 69 KATNB1 0.030 katanin p80 subunit B 1 FBXW7 0.029 F-box and WD repeat domain containing 7 isoform 3 [H... FBXW7 0.029 F-box and WD repeat domain containing 7 isoform 1 [H... FBXW7 0.029 F-box and WD repeat domain containing 7 isoform 2 [H... FBXW11 0.028 F-box and WD repeat domain containing 11 isoform C [... FBXW11 0.028 F-box and WD repeat domain containing 11 isoform A [... FBXW11 0.028 F-box and WD repeat domain containing 11 isoform B [... BTRC 0.028 beta-transducin repeat containing protein isoform 2 [... BTRC 0.028 beta-transducin repeat containing protein isoform 1 ... TAF5 0.027 TBP-associated factor 5 PLRG1 0.026 pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [... SPAG16 0.025 sperm associated antigen 16 isoform 1 PRPF19 0.025 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom... WDR48 0.025 WD repeat domain 48 SNRNP40 0.024 WD repeat domain 57 (U5 snRNP specific) WDR3 0.023 WD repeat-containing protein 3 STRN3 0.023 nuclear autoantigen isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.