Guide to the Human Genome
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Name: PCDHGA12 Sequence: fasta or formatted (820aa) NCBI GI: 14196457
Description:

protocadherin gamma subfamily A, 12 isoform 2 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [932aa] protocadherin gamma subfamily A, 12 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         68           2
 C cysteine            0.9          7           1
 D aspartate           6.6         54           2
 E glutamate           6.5         53           2
 F phenylalanine       3.3         27           3
 G glycine             6.2         51           3
 H histidine           2.0         16           2
 I isoleucine          4.3         35           2
 K lysine              2.8         23           1
 L leucine            12.0         98           3
 M methionine          1.1          9           1
 N asparagine          4.8         39           2
 P proline             5.5         45           2
 Q glutamine           3.8         31           1
 R arginine            5.1         42           2
 S serine              9.0         74           2
 T threonine           5.2         43           2
 V valine              8.9         73           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin gamma subfamily A, 12 isoform 2 precur... 
PCDHGA12              0.985   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA10              0.722   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDHGA10              0.719   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA11              0.711   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.711   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA3               0.696   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA3               0.692   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA7               0.691   protocadherin gamma subfamily A, 7 isoform 2 precurs...
PCDHGA6               0.691   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA7               0.690   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA6               0.690   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA5               0.689   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA4               0.688   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA4               0.688   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGA5               0.688   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGA8               0.683   protocadherin gamma subfamily A, 8 isoform 2 precurso...
PCDHGA8               0.683   protocadherin gamma subfamily A, 8 isoform 1 precurs...
PCDHGA9               0.680   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGA1               0.680   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.680   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA9               0.675   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA2               0.670   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA2               0.669   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGA11              0.530   protocadherin gamma subfamily A, 11 isoform 3 precur...
PCDHGB7               0.435   protocadherin gamma subfamily B, 7 isoform 2 precurs...
PCDHGB7               0.435   protocadherin gamma subfamily B, 7 isoform 1 precurs...
PCDHGB2               0.418   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB4               0.418   protocadherin gamma subfamily B, 4 isoform 2 precurs...
PCDHGB4               0.418   protocadherin gamma subfamily B, 4 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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