Guide to the Human Genome
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Name: PCDHGA7 Sequence: fasta or formatted (817aa) NCBI GI: 14196477
Description:

protocadherin gamma subfamily A, 7 isoform 2 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [932aa] protocadherin gamma subfamily A, 7 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         55           2
 C cysteine            0.7          6           1
 D aspartate           7.0         57           2
 E glutamate           6.6         54           3
 F phenylalanine       3.3         27           2
 G glycine             5.9         48           2
 H histidine           2.0         16           2
 I isoleucine          4.3         35           2
 K lysine              2.8         23           1
 L leucine            12.1         99           3
 M methionine          1.5         12           1
 N asparagine          4.4         36           2
 P proline             6.4         52           2
 Q glutamine           3.9         32           1
 R arginine            4.5         37           2
 S serine              8.6         70           3
 T threonine           6.9         56           2
 V valine              8.6         70           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin gamma subfamily A, 7 isoform 2 precurs... 
PCDHGA7               0.990   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA6               0.714   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA6               0.714   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA10              0.709   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDHGA10              0.709   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA8               0.707   protocadherin gamma subfamily A, 8 isoform 2 precurso...
PCDHGA3               0.706   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA3               0.706   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA8               0.705   protocadherin gamma subfamily A, 8 isoform 1 precurs...
PCDHGA4               0.695   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA4               0.694   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGA5               0.694   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGA5               0.694   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA12              0.690   protocadherin gamma subfamily A, 12 isoform 2 precur...
PCDHGA12              0.689   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA2               0.687   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGA2               0.687   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA1               0.676   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.675   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA11              0.672   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.672   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA9               0.671   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGA9               0.671   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA11              0.502   protocadherin gamma subfamily A, 11 isoform 3 precur...
PCDHGB2               0.408   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB2               0.408   protocadherin gamma subfamily B, 2 isoform 2 precurs...
PCDHGB1               0.407   protocadherin gamma subfamily B, 1 isoform 2 precurs...
PCDHGB1               0.407   protocadherin gamma subfamily B, 1 isoform 1 precurs...
PCDHGB6               0.407   protocadherin gamma subfamily B, 6 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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