Guide to the Human Genome
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Name: PCDHGA11 Sequence: fasta or formatted (837aa) NCBI GI: 14196451
Description:

protocadherin gamma subfamily A, 11 isoform 2 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [935aa] protocadherin gamma subfamily A, 11 isoform 1 precursor
alt prot [750aa] protocadherin gamma subfamily A, 11 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         55           2
 C cysteine            1.2         10           1
 D aspartate           6.3         53           2
 E glutamate           6.3         53           2
 F phenylalanine       3.5         29           1
 G glycine             6.5         54           3
 H histidine           1.4         12           1
 I isoleucine          5.1         43           2
 K lysine              2.7         23           1
 L leucine            12.3        103           5
 M methionine          1.1          9           1
 N asparagine          4.9         41           2
 P proline             5.5         46           2
 Q glutamine           4.1         34           1
 R arginine            5.3         44           2
 S serine              9.7         81           2
 T threonine           5.4         45           4
 V valine              8.7         73           3
 W tryptophan          0.6          5           1
 Y tyrosine            2.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin gamma subfamily A, 11 isoform 2 precur... 
PCDHGA11              0.967   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA11              0.747   protocadherin gamma subfamily A, 11 isoform 3 precur...
PCDHGA12              0.697   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA12              0.697   protocadherin gamma subfamily A, 12 isoform 2 precur...
PCDHGA10              0.684   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA10              0.684   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDHGA4               0.673   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGA4               0.672   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA3               0.671   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA5               0.671   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGA3               0.671   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA6               0.670   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA5               0.669   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA6               0.668   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA8               0.667   protocadherin gamma subfamily A, 8 isoform 1 precurs...
PCDHGA8               0.667   protocadherin gamma subfamily A, 8 isoform 2 precurso...
PCDHGA1               0.665   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.663   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA7               0.660   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA7               0.660   protocadherin gamma subfamily A, 7 isoform 2 precurs...
PCDHGA9               0.651   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA9               0.651   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGA2               0.641   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA2               0.641   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGB7               0.414   protocadherin gamma subfamily B, 7 isoform 2 precurs...
PCDHGB7               0.414   protocadherin gamma subfamily B, 7 isoform 1 precurs...
PCDHGB5               0.409   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.409   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGB6               0.407   protocadherin gamma subfamily B, 6 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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