Guide to the Human Genome
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Name: PCDH7 Sequence: fasta or formatted (1200aa) NCBI GI: 14589935
Description:

protocadherin 7 isoform c precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [1069aa] protocadherin 7 isoform a precursor
alt prot [1072aa] protocadherin 7 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         69           3
 C cysteine            1.1         13           2
 D aspartate           7.2         87           2
 E glutamate           6.1         73           2
 F phenylalanine       2.9         35           2
 G glycine             8.2         98           4
 H histidine           1.2         15           1
 I isoleucine          4.4         53           2
 K lysine              5.2         62           3
 L leucine             7.8         94           3
 M methionine          1.5         18           1
 N asparagine          5.4         65           3
 P proline             6.4         77           2
 Q glutamine           3.9         47           2
 R arginine            5.1         61           2
 S serine              9.4        113           3
 T threonine           6.5         78           3
 V valine              8.6        103           2
 W tryptophan          0.4          5           1
 Y tyrosine            2.8         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin 7 isoform c precursor 
PCDH7                 0.829   protocadherin 7 isoform b precursor 
PCDH7                 0.829   protocadherin 7 isoform a precursor 
PCDH1                 0.451   protocadherin 1 isoform 2 precursor 
PCDH1                 0.371   protocadherin 1 isoform 1 precursor 
PCDH9                 0.289   protocadherin 9 isoform 2 precursor 
PCDH9                 0.284   protocadherin 9 isoform 1 precursor 
PCDH11Y               0.249   protocadherin 11 Y-linked isoform c 
PCDH11X               0.245   protocadherin 11 X-linked isoform d 
PCDH11X               0.243   protocadherin 11 X-linked isoform c 
PCDH11X               0.237   protocadherin 11 X-linked isoform b precursor 
PCDH11Y               0.236   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.236   protocadherin 11 Y-linked isoform a 
PCDH11X               0.234   protocadherin 11 X-linked isoform a precursor 
PCDH20                0.145   protocadherin 20 
PCDH10                0.120   protocadherin 10 isoform 1 precursor 
PCDH10                0.120   protocadherin 10 isoform 2 precursor 
PCDHGB5               0.114   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.114   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGC5               0.111   protocadherin gamma subfamily C, 5 isoform 2 precurs...
PCDHGC5               0.111   protocadherin gamma subfamily C, 5 isoform 1 precurs...
PCDHGB4               0.110   protocadherin gamma subfamily B, 4 isoform 2 precurs...
PCDHGB4               0.110   protocadherin gamma subfamily B, 4 isoform 1 precurs...
PCDHB7                0.108   protocadherin beta 7 precursor 
PCDHGB7               0.108   protocadherin gamma subfamily B, 7 isoform 2 precurs...
PCDHGB7               0.108   protocadherin gamma subfamily B, 7 isoform 1 precurs...
PCDHGB6               0.108   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB6               0.108   protocadherin gamma subfamily B, 6 isoform 2 precurs...
PCDHB10               0.107   protocadherin beta 10 precursor 
PCDHB9                0.106   protocadherin beta 9 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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