Guide to the Human Genome
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Name: PCDH19 Sequence: fasta or formatted (1101aa) NCBI GI: 157426847
Description:

protocadherin 19 isoform a

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [1100aa] protocadherin 19 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         65           3
 C cysteine            1.5         16           1
 D aspartate           6.6         73           2
 E glutamate           6.6         73           3
 F phenylalanine       2.9         32           2
 G glycine             5.8         64           2
 H histidine           2.4         26           2
 I isoleucine          5.7         63           2
 K lysine              4.3         47           4
 L leucine             8.4         93           4
 M methionine          1.3         14           1
 N asparagine          6.1         67           2
 P proline             6.1         67           2
 Q glutamine           3.4         37           2
 R arginine            5.2         57           2
 S serine             10.2        112           3
 T threonine           5.6         62           2
 V valine              8.5         94           2
 W tryptophan          0.2          2           1
 Y tyrosine            3.4         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin 19 isoform a 
PCDH19                0.997   protocadherin 19 isoform b 
PCDH17                0.442   protocadherin 17 precursor 
PCDH10                0.321   protocadherin 10 isoform 1 precursor 
PCDH10                0.292   protocadherin 10 isoform 2 precursor 
PCDH18                0.281   protocadherin 18 precursor 
PCDHAC2               0.239   protocadherin alpha subfamily C, 2 isoform 1 precurso...
PCDHAC2               0.239   protocadherin alpha subfamily C, 2 isoform 2 precurs...
PCDHA5                0.217   protocadherin alpha 5 isoform 1 precursor 
PCDHA5                0.217   protocadherin alpha 5 isoform 2 precursor 
PCDHGA4               0.216   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA4               0.216   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGC4               0.216   protocadherin gamma subfamily C, 4 isoform 2 precurs...
PCDHGC4               0.216   protocadherin gamma subfamily C, 4 isoform 1 precurs...
PCDHA4                0.214   protocadherin alpha 4 isoform 2 precursor 
PCDHA4                0.214   protocadherin alpha 4 isoform 1 precursor 
PCDHA8                0.214   protocadherin alpha 8 isoform 2 precursor 
PCDHA8                0.214   protocadherin alpha 8 isoform 1 precursor 
PCDHA6                0.214   protocadherin alpha 6 isoform 2 precursor 
PCDHA6                0.214   protocadherin alpha 6 isoform 1 precursor 
PCDHA7                0.213   protocadherin alpha 7 isoform 2 precursor 
PCDHA7                0.213   protocadherin alpha 7 isoform 1 precursor 
PCDHGB2               0.213   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB2               0.213   protocadherin gamma subfamily B, 2 isoform 2 precurs...
PCDH12                0.212   protocadherin 12 precursor 
PCDHA11               0.211   protocadherin alpha 11 isoform 2 precursor 
PCDHA11               0.211   protocadherin alpha 11 isoform 1 precursor 
PCDHA13               0.211   protocadherin alpha 13 isoform 2 precursor 
PCDHA13               0.211   protocadherin alpha 13 isoform 1 precursor 
PCDHGC5               0.211   protocadherin gamma subfamily C, 5 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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