PCDH20 10518

Name: PCDH20	Sequence: fasta or formatted (951aa)		NCBI GI: 190194360
Description: protocadherin 20		Referenced in: Cadherins and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 53 2 C cysteine 1.1 10 1 D aspartate 5.9 56 2 E glutamate 6.7 64 2 F phenylalanine 3.4 32 2 G glycine 6.9 66 4 H histidine 1.6 15 1 I isoleucine 6.6 63 3 K lysine 3.8 36 1 L leucine 10.5 100 4 M methionine 1.4 13 1 N asparagine 4.9 47 2 P proline 7.0 67 2 Q glutamine 3.0 29 2 R arginine 4.9 47 2 S serine 8.3 79 3 T threonine 5.6 53 2 V valine 8.2 78 2 W tryptophan 0.8 8 1 Y tyrosine 3.7 35 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 20 PCDH9 0.337 protocadherin 9 isoform 2 precursor PCDH9 0.337 protocadherin 9 isoform 1 precursor PCDH11X 0.322 protocadherin 11 X-linked isoform a precursor PCDH11X 0.322 protocadherin 11 X-linked isoform d PCDH11X 0.322 protocadherin 11 X-linked isoform c PCDH11X 0.322 protocadherin 11 X-linked isoform b precursor PCDH11Y 0.319 protocadherin 11 Y-linked isoform c PCDH11Y 0.319 protocadherin 11 Y-linked isoform b PCDH11Y 0.319 protocadherin 11 Y-linked isoform a PCDH1 0.219 protocadherin 1 isoform 2 precursor PCDH1 0.219 protocadherin 1 isoform 1 precursor PCDH7 0.203 protocadherin 7 isoform b precursor PCDH7 0.203 protocadherin 7 isoform a precursor PCDH7 0.184 protocadherin 7 isoform c precursor PCDH18 0.140 protocadherin 18 precursor PCDHB1 0.136 protocadherin beta 1 precursor PCDHGA11 0.136 protocadherin gamma subfamily A, 11 isoform 2 precur... PCDHGA11 0.136 protocadherin gamma subfamily A, 11 isoform 1 precur... PCDH19 0.134 protocadherin 19 isoform a PCDH19 0.134 protocadherin 19 isoform b PCDH17 0.133 protocadherin 17 precursor PCDHGA12 0.133 protocadherin gamma subfamily A, 12 isoform 1 precurs... PCDHGA12 0.133 protocadherin gamma subfamily A, 12 isoform 2 precur... PCDHGA7 0.133 protocadherin gamma subfamily A, 7 isoform 1 precurs... PCDHGA7 0.133 protocadherin gamma subfamily A, 7 isoform 2 precurs... PCDHAC2 0.132 protocadherin alpha subfamily C, 2 isoform 1 precurso... PCDHAC2 0.132 protocadherin alpha subfamily C, 2 isoform 2 precurs... PCDHGB6 0.132 protocadherin gamma subfamily B, 6 isoform 1 precurs... PCDHGB6 0.132 protocadherin gamma subfamily B, 6 isoform 2 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.