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Search of human proteins with 14589944
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens]
(1048 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens] 2074 0.0
gi|14589946 protocadherin 11 Y-linked isoform c [Homo sapiens] 2066 0.0
gi|14589942 protocadherin 11 Y-linked isoform a [Homo sapiens] 2037 0.0
gi|14589918 protocadherin 11 X-linked isoform b precursor [Homo ... 1971 0.0
gi|7657443 protocadherin 11 X-linked isoform a precursor [Homo s... 1961 0.0
gi|14589922 protocadherin 11 X-linked isoform d [Homo sapiens] 1961 0.0
gi|14589920 protocadherin 11 X-linked isoform c [Homo sapiens] 1961 0.0
gi|9966883 protocadherin 9 isoform 2 precursor [Homo sapiens] 1176 0.0
gi|45243534 protocadherin 9 isoform 1 precursor [Homo sapiens] 1176 0.0
gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens] 654 0.0
gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens] 654 0.0
gi|190194360 protocadherin 20 [Homo sapiens] 623 e-178
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 607 e-173
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 607 e-173
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 583 e-166
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 365 e-100
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur... 365 e-100
gi|14589929 protocadherin 18 precursor [Homo sapiens] 360 4e-99
gi|157426847 protocadherin 19 isoform a [Homo sapiens] 355 1e-97
gi|157426845 protocadherin 19 isoform b [Homo sapiens] 355 1e-97
gi|94538350 protocadherin 17 precursor [Homo sapiens] 355 2e-97
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 352 8e-97
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 352 8e-97
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 349 9e-96
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 349 9e-96
gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens] 348 2e-95
gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens] 348 2e-95
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 346 6e-95
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 346 6e-95
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 345 1e-94
>gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens]
Length = 1048
Score = 2074 bits (5373), Expect = 0.0
Identities = 1048/1048 (100%), Positives = 1048/1048 (100%)
Query: 1 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY 60
MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
Sbjct: 1 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY 60
Query: 61 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG 120
TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
Sbjct: 61 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG 120
Query: 121 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI 180
ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
Sbjct: 121 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI 180
Query: 181 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD 240
PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
Sbjct: 181 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD 240
Query: 241 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV 300
REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
Sbjct: 241 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV 300
Query: 301 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL 360
TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
Sbjct: 301 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL 360
Query: 361 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK 420
ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
Sbjct: 361 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK 420
Query: 421 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ 480
DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
Sbjct: 421 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ 480
Query: 481 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD 540
SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
Sbjct: 481 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD 540
Query: 541 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP 600
APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
Sbjct: 541 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP 600
Query: 601 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN 660
VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
Sbjct: 601 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN 660
Query: 661 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS 720
ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
Sbjct: 661 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS 720
Query: 721 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR 780
TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
Sbjct: 721 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR 780
Query: 781 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS 840
VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
Sbjct: 781 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS 840
Query: 841 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK 900
DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
Sbjct: 841 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK 900
Query: 901 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF 960
KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
Sbjct: 901 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF 960
Query: 961 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP 1020
KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
Sbjct: 961 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP 1020
Query: 1021 YSVSDCGYPVTTFEVPVSVHTRPTDSRT 1048
YSVSDCGYPVTTFEVPVSVHTRPTDSRT
Sbjct: 1021 YSVSDCGYPVTTFEVPVSVHTRPTDSRT 1048
>gi|14589946 protocadherin 11 Y-linked isoform c [Homo sapiens]
Length = 1340
Score = 2066 bits (5353), Expect = 0.0
Identities = 1044/1047 (99%), Positives = 1045/1047 (99%)
Query: 1 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY 60
MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
Sbjct: 1 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY 60
Query: 61 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG 120
TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
Sbjct: 61 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG 120
Query: 121 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI 180
ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
Sbjct: 121 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI 180
Query: 181 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD 240
PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
Sbjct: 181 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD 240
Query: 241 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV 300
REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
Sbjct: 241 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV 300
Query: 301 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL 360
TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
Sbjct: 301 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL 360
Query: 361 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK 420
ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
Sbjct: 361 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK 420
Query: 421 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ 480
DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
Sbjct: 421 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ 480
Query: 481 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD 540
SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
Sbjct: 481 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD 540
Query: 541 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP 600
APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
Sbjct: 541 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP 600
Query: 601 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN 660
VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
Sbjct: 601 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN 660
Query: 661 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS 720
ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
Sbjct: 661 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS 720
Query: 721 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR 780
TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
Sbjct: 721 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR 780
Query: 781 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS 840
VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
Sbjct: 781 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS 840
Query: 841 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK 900
DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
Sbjct: 841 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK 900
Query: 901 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF 960
KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
Sbjct: 901 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF 960
Query: 961 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP 1020
KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
Sbjct: 961 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP 1020
Query: 1021 YSVSDCGYPVTTFEVPVSVHTRPTDSR 1047
YSVSDCGYPVTTFEVPVSVHTRP+ R
Sbjct: 1021 YSVSDCGYPVTTFEVPVSVHTRPSQRR 1047
>gi|14589942 protocadherin 11 Y-linked isoform a [Homo sapiens]
Length = 1037
Score = 2037 bits (5278), Expect = 0.0
Identities = 1027/1027 (100%), Positives = 1027/1027 (100%)
Query: 22 SVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNL 81
SVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNL
Sbjct: 11 SVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNL 70
Query: 82 SLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYE 141
SLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYE
Sbjct: 71 SLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYE 130
Query: 142 VEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVG 201
VEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVG
Sbjct: 131 VEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVG 190
Query: 202 INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQR 261
INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQR
Sbjct: 191 INGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQR 250
Query: 262 SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFS 321
SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFS
Sbjct: 251 SSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFS 310
Query: 322 NLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVN 381
NLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVN
Sbjct: 311 NLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVN 370
Query: 382 DNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLR 441
DNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLR
Sbjct: 371 DNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLR 430
Query: 442 PVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQS 501
PVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQS
Sbjct: 431 PVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQS 490
Query: 502 FVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLD 561
FVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLD
Sbjct: 491 FVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLD 550
Query: 562 REKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTV 621
REKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTV
Sbjct: 551 REKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTV 610
Query: 622 GLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
GLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG
Sbjct: 611 GLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 670
Query: 682 RVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNA 741
RVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNA
Sbjct: 671 RVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNA 730
Query: 742 EVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVN 801
EVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVN
Sbjct: 731 EVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVN 790
Query: 802 LFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIF 861
LFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIF
Sbjct: 791 LFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIF 850
Query: 862 ITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIE 921
ITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIE
Sbjct: 851 ITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIE 910
Query: 922 ETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQ 981
ETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQ
Sbjct: 911 ETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQ 970
Query: 982 IQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHT 1041
IQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHT
Sbjct: 971 IQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHT 1030
Query: 1042 RPTDSRT 1048
RPTDSRT
Sbjct: 1031 RPTDSRT 1037
>gi|14589918 protocadherin 11 X-linked isoform b precursor [Homo
sapiens]
Length = 1025
Score = 1971 bits (5106), Expect = 0.0
Identities = 997/1014 (98%), Positives = 1000/1014 (98%)
Query: 35 LLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQ 94
LLSGTYIFAVLL CVVFHSGAQEKNYTIREE+PENVLIG+LLKDLNLSLIPNKSLTT MQ
Sbjct: 3 LLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQ 62
Query: 95 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 154
FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL
Sbjct: 63 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 122
Query: 155 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 214
VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ
Sbjct: 123 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 182
Query: 215 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 274
NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT
Sbjct: 183 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 242
Query: 275 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 334
NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL
Sbjct: 243 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 302
Query: 335 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 394
NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN
Sbjct: 303 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 362
Query: 395 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAA 454
PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLE AA
Sbjct: 363 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLETAA 422
Query: 455 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 514
YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG
Sbjct: 423 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 482
Query: 515 IQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILA 574
IQL KVSA DADSGPNA+INYLLGPDAPPEFSLD RTGMLTVVKKLDREKEDKYLFTILA
Sbjct: 483 IQLTKVSAMDADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILA 542
Query: 575 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDN 634
KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEY FYVPENLPRHGTVGLITVTDPDYGDN
Sbjct: 543 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDN 602
Query: 635 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 694
SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN
Sbjct: 603 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 662
Query: 695 VVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 754
VVDVNDNKPVFIVPP N SYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD
Sbjct: 663 VVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 722
Query: 755 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 814
LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI
Sbjct: 723 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 782
Query: 815 NELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 874
NELVRKS EAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL
Sbjct: 783 NELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 842
Query: 875 KAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNR 934
KAAQKN QNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLN VTIEETKADDVDSDGNR
Sbjct: 843 KAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNR 902
Query: 935 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNLKHHI 994
VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLN KHHI
Sbjct: 903 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHI 962
Query: 995 IQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRT 1048
IQELPLDNTFVACDSIS CSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRT
Sbjct: 963 IQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRT 1016
>gi|7657443 protocadherin 11 X-linked isoform a precursor [Homo
sapiens]
Length = 1021
Score = 1961 bits (5081), Expect = 0.0
Identities = 992/1009 (98%), Positives = 995/1009 (98%)
Query: 35 LLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQ 94
LLSGTYIFAVLL CVVFHSGAQEKNYTIREE+PENVLIG+LLKDLNLSLIPNKSLTT MQ
Sbjct: 3 LLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQ 62
Query: 95 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 154
FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL
Sbjct: 63 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 122
Query: 155 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 214
VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ
Sbjct: 123 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 182
Query: 215 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 274
NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT
Sbjct: 183 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 242
Query: 275 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 334
NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL
Sbjct: 243 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 302
Query: 335 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 394
NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN
Sbjct: 303 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 362
Query: 395 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAA 454
PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLE AA
Sbjct: 363 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLETAA 422
Query: 455 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 514
YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG
Sbjct: 423 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 482
Query: 515 IQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILA 574
IQL KVSA DADSGPNA+INYLLGPDAPPEFSLD RTGMLTVVKKLDREKEDKYLFTILA
Sbjct: 483 IQLTKVSAMDADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILA 542
Query: 575 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDN 634
KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEY FYVPENLPRHGTVGLITVTDPDYGDN
Sbjct: 543 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDN 602
Query: 635 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 694
SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN
Sbjct: 603 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 662
Query: 695 VVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 754
VVDVNDNKPVFIVPP N SYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD
Sbjct: 663 VVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 722
Query: 755 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 814
LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI
Sbjct: 723 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 782
Query: 815 NELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 874
NELVRKS EAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL
Sbjct: 783 NELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 842
Query: 875 KAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNR 934
KAAQKN QNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLN VTIEETKADDVDSDGNR
Sbjct: 843 KAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNR 902
Query: 935 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNLKHHI 994
VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLN KHHI
Sbjct: 903 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHI 962
Query: 995 IQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP 1043
IQELPLDNTFVACDSIS CSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP
Sbjct: 963 IQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP 1011
>gi|14589922 protocadherin 11 X-linked isoform d [Homo sapiens]
Length = 1337
Score = 1961 bits (5081), Expect = 0.0
Identities = 992/1009 (98%), Positives = 995/1009 (98%)
Query: 35 LLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQ 94
LLSGTYIFAVLL CVVFHSGAQEKNYTIREE+PENVLIG+LLKDLNLSLIPNKSLTT MQ
Sbjct: 3 LLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQ 62
Query: 95 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 154
FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL
Sbjct: 63 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 122
Query: 155 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 214
VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ
Sbjct: 123 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 182
Query: 215 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 274
NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT
Sbjct: 183 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 242
Query: 275 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 334
NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL
Sbjct: 243 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 302
Query: 335 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 394
NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN
Sbjct: 303 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 362
Query: 395 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAA 454
PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLE AA
Sbjct: 363 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLETAA 422
Query: 455 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 514
YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG
Sbjct: 423 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 482
Query: 515 IQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILA 574
IQL KVSA DADSGPNA+INYLLGPDAPPEFSLD RTGMLTVVKKLDREKEDKYLFTILA
Sbjct: 483 IQLTKVSAMDADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILA 542
Query: 575 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDN 634
KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEY FYVPENLPRHGTVGLITVTDPDYGDN
Sbjct: 543 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDN 602
Query: 635 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 694
SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN
Sbjct: 603 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 662
Query: 695 VVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 754
VVDVNDNKPVFIVPP N SYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD
Sbjct: 663 VVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 722
Query: 755 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 814
LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI
Sbjct: 723 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 782
Query: 815 NELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 874
NELVRKS EAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL
Sbjct: 783 NELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 842
Query: 875 KAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNR 934
KAAQKN QNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLN VTIEETKADDVDSDGNR
Sbjct: 843 KAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNR 902
Query: 935 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNLKHHI 994
VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLN KHHI
Sbjct: 903 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHI 962
Query: 995 IQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP 1043
IQELPLDNTFVACDSIS CSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP
Sbjct: 963 IQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP 1011
>gi|14589920 protocadherin 11 X-linked isoform c [Homo sapiens]
Length = 1347
Score = 1961 bits (5081), Expect = 0.0
Identities = 992/1009 (98%), Positives = 995/1009 (98%)
Query: 35 LLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQ 94
LLSGTYIFAVLL CVVFHSGAQEKNYTIREE+PENVLIG+LLKDLNLSLIPNKSLTT MQ
Sbjct: 3 LLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQ 62
Query: 95 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 154
FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL
Sbjct: 63 FKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRL 122
Query: 155 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 214
VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ
Sbjct: 123 VKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQ 182
Query: 215 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 274
NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT
Sbjct: 183 NIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDT 242
Query: 275 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 334
NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL
Sbjct: 243 NDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHL 302
Query: 335 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 394
NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN
Sbjct: 303 NATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVN 362
Query: 395 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAA 454
PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLE AA
Sbjct: 363 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLETAA 422
Query: 455 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 514
YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG
Sbjct: 423 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 482
Query: 515 IQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILA 574
IQL KVSA DADSGPNA+INYLLGPDAPPEFSLD RTGMLTVVKKLDREKEDKYLFTILA
Sbjct: 483 IQLTKVSAMDADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILA 542
Query: 575 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDN 634
KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEY FYVPENLPRHGTVGLITVTDPDYGDN
Sbjct: 543 KDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDN 602
Query: 635 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 694
SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN
Sbjct: 603 SAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTIN 662
Query: 695 VVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 754
VVDVNDNKPVFIVPP N SYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD
Sbjct: 663 VVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRD 722
Query: 755 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 814
LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI
Sbjct: 723 LFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 782
Query: 815 NELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 874
NELVRKS EAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL
Sbjct: 783 NELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHL 842
Query: 875 KAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNR 934
KAAQKN QNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLN VTIEETKADDVDSDGNR
Sbjct: 843 KAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNR 902
Query: 935 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNLKHHI 994
VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLN KHHI
Sbjct: 903 VTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHI 962
Query: 995 IQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP 1043
IQELPLDNTFVACDSIS CSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP
Sbjct: 963 IQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP 1011
>gi|9966883 protocadherin 9 isoform 2 precursor [Homo sapiens]
Length = 1203
Score = 1176 bits (3043), Expect = 0.0
Identities = 588/1017 (57%), Positives = 778/1017 (76%), Gaps = 16/1017 (1%)
Query: 40 YIFAVLLVCVVFHSG-AQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTT-TMQFKL 97
Y+ A L+ C+ S AQE YTIREE+PENV IGN+ KDLN+S I + T+ ++ ++L
Sbjct: 7 YLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRL 66
Query: 98 VYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIP--RDEHCFYEVEVAILPDEIFRLV 155
V K GD PL+++ TGEIFTT RIDREKLCAG + CF+E+EV ILP++ FRL+
Sbjct: 67 VSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLI 126
Query: 156 KIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQN 215
KI+ +++D NDNAP+FP+ VINISIPEN+ INS++ +P+A DPD G NGVQ+YEL+ Q+
Sbjct: 127 KIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQS 186
Query: 216 IFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTN 275
+FGLD++ETPEG+K PQLIVQ+ LDRE+KDTYVMK+KVEDGG PQ+SSTAILQV+V+D N
Sbjct: 187 VFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVN 246
Query: 276 DNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLN 335
DN PVFKE ++EV IPENAPVGTSV QLHATDADIG NA+I + F V+ +RLF LN
Sbjct: 247 DNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALN 306
Query: 336 ATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNP 395
TTGLIT++ LDREET HK+ VLASDG PARA V +NVTDVNDN P+ID+RYI++P
Sbjct: 307 NTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISP 366
Query: 396 VNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAY 455
+N TV LSE P+NTKIALITV+DKD D NG+V CF + E+PF L+ V+ NQ+LLE ++
Sbjct: 367 INGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSL 426
Query: 456 LDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGI 515
LDYE TKE++ K++A+D+GKP LNQ+A++ +K++DENDN P+F Q + +S+ ENN G+
Sbjct: 427 LDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGL 486
Query: 516 QLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAK 575
L +SATD DSG NA+I Y LGP+A F LDR+TG+LT + DRE++++++FT+ A+
Sbjct: 487 YLTTISATDEDSGKNADIVYQLGPNA-SFFDLDRKTGVLTASRVFDREEQERFIFTVTAR 545
Query: 576 DNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNS 635
DNG PPL S V V+++D+NDNSP FTHN ++F+V ENLP++ TVG+ITVTD D G+N
Sbjct: 546 DNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENK 605
Query: 636 AVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINV 695
AVTLSIL++ND+F +D +GVI+ N+SFDRE+Q SYTF VKA DGG+ RSS+AKVTINV
Sbjct: 606 AVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINV 665
Query: 696 VDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDL 755
+DVNDN PV I PP N S++LV S PG+VV +V AVD DTGMNAE++Y+IV GN + L
Sbjct: 666 MDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSGNNKGL 725
Query: 756 FAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLIN 815
F ID TGNITL EK TD+GLHR++V +DLG P SL ++V+V L+VN++ NA+ I
Sbjct: 726 FRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGNASYIY 785
Query: 816 ELVRKSIEAPVTPNTEIADVSSP--TSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPH 873
+L+R+++E P+ N I D S P DY+ I++A +AG + V+VVIF+T +VRCR A
Sbjct: 786 DLIRRTMETPLDRN--IGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRHASR 843
Query: 874 LKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGN 933
KAAQ++ Q +EW +PN EN+Q KKKK+KK+ SPK+ LLN VTIEE+K DD +
Sbjct: 844 FKAAQRSKQGAEWMSPNQENKQ---NKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI 900
Query: 934 RVTLDLPIDLEEQTMGKYNW-VTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNL-K 991
T+ LP +LEEQ++G+++W PTTFKP+SPDLA+HYKSASPQPAF ++P+TP+++ K
Sbjct: 901 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK 960
Query: 992 HHIIQELPLDNTFV-ACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSR 1047
HH+IQELPLDNTFV CD++S SS+SSD +S S+C F+ +HTR + R
Sbjct: 961 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECS-SQGGFKTKGPLHTRQSQRR 1016
>gi|45243534 protocadherin 9 isoform 1 precursor [Homo sapiens]
Length = 1237
Score = 1176 bits (3043), Expect = 0.0
Identities = 588/1018 (57%), Positives = 779/1018 (76%), Gaps = 16/1018 (1%)
Query: 40 YIFAVLLVCVVFHSG-AQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTT-TMQFKL 97
Y+ A L+ C+ S AQE YTIREE+PENV IGN+ KDLN+S I + T+ ++ ++L
Sbjct: 7 YLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRL 66
Query: 98 VYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIP--RDEHCFYEVEVAILPDEIFRLV 155
V K GD PL+++ TGEIFTT RIDREKLCAG + CF+E+EV ILP++ FRL+
Sbjct: 67 VSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLI 126
Query: 156 KIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQN 215
KI+ +++D NDNAP+FP+ VINISIPEN+ INS++ +P+A DPD G NGVQ+YEL+ Q+
Sbjct: 127 KIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQS 186
Query: 216 IFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTN 275
+FGLD++ETPEG+K PQLIVQ+ LDRE+KDTYVMK+KVEDGG PQ+SSTAILQV+V+D N
Sbjct: 187 VFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVN 246
Query: 276 DNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLN 335
DN PVFKE ++EV IPENAPVGTSV QLHATDADIG NA+I + F V+ +RLF LN
Sbjct: 247 DNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALN 306
Query: 336 ATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNP 395
TTGLIT++ LDREET HK+ VLASDG PARA V +NVTDVNDN P+ID+RYI++P
Sbjct: 307 NTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDLRYIISP 366
Query: 396 VNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAY 455
+N TV LSE P+NTKIALITV+DKD D NG+V CF + E+PF L+ V+ NQ+LLE ++
Sbjct: 367 INGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLETSSL 426
Query: 456 LDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGI 515
LDYE TKE++ K++A+D+GKP LNQ+A++ +K++DENDN P+F Q + +S+ ENN G+
Sbjct: 427 LDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGL 486
Query: 516 QLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAK 575
L +SATD DSG NA+I Y LGP+A F LDR+TG+LT + DRE++++++FT+ A+
Sbjct: 487 YLTTISATDEDSGKNADIVYQLGPNA-SFFDLDRKTGVLTASRVFDREEQERFIFTVTAR 545
Query: 576 DNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNS 635
DNG PPL S V V+++D+NDNSP FTHN ++F+V ENLP++ TVG+ITVTD D G+N
Sbjct: 546 DNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENK 605
Query: 636 AVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINV 695
AVTLSIL++ND+F +D +GVI+ N+SFDRE+Q SYTF VKA DGG+ RSS+AKVTINV
Sbjct: 606 AVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINV 665
Query: 696 VDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDL 755
+DVNDN PV I PP N S++LV S PG+VV +V AVD DTGMNAE++Y+IV GN + L
Sbjct: 666 MDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSGNNKGL 725
Query: 756 FAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLIN 815
F ID TGNITL EK TD+GLHR++V +DLG P SL ++V+V L+VN++ NA+ I
Sbjct: 726 FRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGNASYIY 785
Query: 816 ELVRKSIEAPVTPNTEIADVSSP--TSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPH 873
+L+R+++E P+ N I D S P DY+ I++A +AG + V+VVIF+T +VRCR A
Sbjct: 786 DLIRRTMETPLDRN--IGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRHASR 843
Query: 874 LKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGN 933
KAAQ++ Q +EW +PN EN+Q KKKK+KK+ SPK+ LLN VTIEE+K DD +
Sbjct: 844 FKAAQRSKQGAEWMSPNQENKQ---NKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI 900
Query: 934 RVTLDLPIDLEEQTMGKYNW-VTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNL-K 991
T+ LP +LEEQ++G+++W PTTFKP+SPDLA+HYKSASPQPAF ++P+TP+++ K
Sbjct: 901 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK 960
Query: 992 HHIIQELPLDNTFV-ACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRT 1048
HH+IQELPLDNTFV CD++S SS+SSD +S S+C F+ +HTR +S +
Sbjct: 961 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECS-SQGGFKTKGPLHTRQCNSHS 1017
>gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens]
Length = 1237
Score = 654 bits (1687), Expect = 0.0
Identities = 399/1012 (39%), Positives = 571/1012 (56%), Gaps = 51/1012 (5%)
Query: 35 LLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQ 94
LL + + A+LL+ A Y + EE P N LIG+L D + +
Sbjct: 37 LLLPSMLLALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYGFPDVGH-------- 88
Query: 95 FKLVYKTG-DVPLIRIEEDTGEIFTTGARIDREKL--CAGIPRDEHCFYEVEVAI---LP 148
+YK P +R++ TG+IFTT IDRE L C + C E EV+I +
Sbjct: 89 ---LYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQLPGDPCILEFEVSITDLVQ 145
Query: 149 DEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNY 208
+ RL++ + ++DINDN P F + VI ++IPEN+ I S + +P A D D G NGV +Y
Sbjct: 146 NGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLASDRDAGPNGVASY 205
Query: 209 ELI---KSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTA 265
EL ++Q +FGL V E E +K PQLIV LDRE D+Y + +KV+DGG P R+S+A
Sbjct: 206 ELQAGPEAQELFGLQVAEDQE-EKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRASSA 264
Query: 266 ILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVS 325
+L+V+V DTNDN P F+ E + EN+P+G SV Q+ A D+D G NA+I ++F
Sbjct: 265 LLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIEYTFHQ-AP 323
Query: 326 NIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMP--ARAMVLVNVTDVNDN 383
+ RRL L+ TGLIT++ P+DRE+ + VLA D G P ARA V+V V D+NDN
Sbjct: 324 EVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDN 383
Query: 384 VPSIDIRYI--VNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLR 441
P+I+IR I V + +SE++ T +AL+ V+D+D N VTC ++PF+LR
Sbjct: 384 APTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLR 443
Query: 442 PVFSN------QFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNA 495
++ L+ LDYE K+Y I+++A D+G PPL+ + L ++V D NDNA
Sbjct: 444 QASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNA 503
Query: 496 PVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE--FSLDRRTGM 553
PVFTQS V+ PENN PG + +++A+DADSG NAE+ Y L P+ + F++ TG
Sbjct: 504 PVFTQSVTEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGE 563
Query: 554 LTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPE 613
+ V LDRE+ + Y ++A D G P L TV V+++D NDN P F + Y F V E
Sbjct: 564 IQVKTSLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVME 623
Query: 614 NLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTF 673
N+P VG++TV D D G+N+ V LS+ +N DF I + TG I ++SFDRE+Q +YTF
Sbjct: 624 NMPALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYTF 683
Query: 674 YVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAV 733
+KA DGG RS+ VTINV+D NDN P +I P N S++L+ P T G V QV A
Sbjct: 684 QLKAVDGGVPPRSAYVGVTINVLDENDNAP-YITAPSNTSHKLLTPQTRLGETVSQVAAE 742
Query: 734 DNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDS 793
D D+G+NAE+ YSI GGN LF I +G ITL ++ + GLHR++VK +D G+P
Sbjct: 743 DFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPR 802
Query: 794 LFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGT 853
+ +V+L+VNE++ N TL+ L+ S++ P+ + + IL VAG
Sbjct: 803 -YGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGV 861
Query: 854 ITVVVVIFITAVVR-CRQAPHLKAAQK-NMQNSEWATPNPENRQMIMMKKKKKKKKHSPK 911
+ V ++I + +VR CRQ Q + + P P + K K KK K SPK
Sbjct: 862 VAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKSK-SPK 920
Query: 912 NLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHY 971
V +E D D + L +L G + P + P SPDL RHY
Sbjct: 921 ----PVKPVE-------DEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHY 969
Query: 972 KSASPQPAFQIQPETP-LNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYS 1022
+S SP P+ Q+QP++P + KH ++Q+LP NTFV ++ S YS
Sbjct: 970 RSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYS 1021
>gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens]
Length = 1060
Score = 654 bits (1687), Expect = 0.0
Identities = 399/1012 (39%), Positives = 571/1012 (56%), Gaps = 51/1012 (5%)
Query: 35 LLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQ 94
LL + + A+LL+ A Y + EE P N LIG+L D + +
Sbjct: 37 LLLPSMLLALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYGFPDVGH-------- 88
Query: 95 FKLVYKTG-DVPLIRIEEDTGEIFTTGARIDREKL--CAGIPRDEHCFYEVEVAI---LP 148
+YK P +R++ TG+IFTT IDRE L C + C E EV+I +
Sbjct: 89 ---LYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQLPGDPCILEFEVSITDLVQ 145
Query: 149 DEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNY 208
+ RL++ + ++DINDN P F + VI ++IPEN+ I S + +P A D D G NGV +Y
Sbjct: 146 NGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLASDRDAGPNGVASY 205
Query: 209 ELI---KSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTA 265
EL ++Q +FGL V E E +K PQLIV LDRE D+Y + +KV+DGG P R+S+A
Sbjct: 206 ELQAGPEAQELFGLQVAEDQE-EKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRASSA 264
Query: 266 ILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVS 325
+L+V+V DTNDN P F+ E + EN+P+G SV Q+ A D+D G NA+I ++F
Sbjct: 265 LLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIEYTFHQ-AP 323
Query: 326 NIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMP--ARAMVLVNVTDVNDN 383
+ RRL L+ TGLIT++ P+DRE+ + VLA D G P ARA V+V V D+NDN
Sbjct: 324 EVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDN 383
Query: 384 VPSIDIRYI--VNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLR 441
P+I+IR I V + +SE++ T +AL+ V+D+D N VTC ++PF+LR
Sbjct: 384 APTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLR 443
Query: 442 PVFSN------QFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNA 495
++ L+ LDYE K+Y I+++A D+G PPL+ + L ++V D NDNA
Sbjct: 444 QASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNA 503
Query: 496 PVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE--FSLDRRTGM 553
PVFTQS V+ PENN PG + +++A+DADSG NAE+ Y L P+ + F++ TG
Sbjct: 504 PVFTQSVTEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGE 563
Query: 554 LTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPE 613
+ V LDRE+ + Y ++A D G P L TV V+++D NDN P F + Y F V E
Sbjct: 564 IQVKTSLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVME 623
Query: 614 NLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTF 673
N+P VG++TV D D G+N+ V LS+ +N DF I + TG I ++SFDRE+Q +YTF
Sbjct: 624 NMPALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYTF 683
Query: 674 YVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAV 733
+KA DGG RS+ VTINV+D NDN P +I P N S++L+ P T G V QV A
Sbjct: 684 QLKAVDGGVPPRSAYVGVTINVLDENDNAP-YITAPSNTSHKLLTPQTRLGETVSQVAAE 742
Query: 734 DNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDS 793
D D+G+NAE+ YSI GGN LF I +G ITL ++ + GLHR++VK +D G+P
Sbjct: 743 DFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPR 802
Query: 794 LFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGT 853
+ +V+L+VNE++ N TL+ L+ S++ P+ + + IL VAG
Sbjct: 803 -YGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGV 861
Query: 854 ITVVVVIFITAVVR-CRQAPHLKAAQK-NMQNSEWATPNPENRQMIMMKKKKKKKKHSPK 911
+ V ++I + +VR CRQ Q + + P P + K K KK K SPK
Sbjct: 862 VAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKSK-SPK 920
Query: 912 NLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHY 971
V +E D D + L +L G + P + P SPDL RHY
Sbjct: 921 ----PVKPVE-------DEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHY 969
Query: 972 KSASPQPAFQIQPETP-LNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYS 1022
+S SP P+ Q+QP++P + KH ++Q+LP NTFV ++ S YS
Sbjct: 970 RSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYS 1021
>gi|190194360 protocadherin 20 [Homo sapiens]
Length = 951
Score = 623 bits (1606), Expect = e-178
Identities = 345/820 (42%), Positives = 503/820 (61%), Gaps = 43/820 (5%)
Query: 40 YIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVY 99
++F C+ +S A E Y++ E +P VLIG+L +DL L +P + Q +L
Sbjct: 50 FLFVGPFSCLGSYSRATELLYSLNEGLPAGVLIGSLAEDLRL--LPRSAGRPDPQSQLPE 107
Query: 100 KTG---DVPL-------------IRIEEDTGEIFTTGARIDREKLC-------------- 129
+TG + PL + ++ +GE+ T+ IDRE LC
Sbjct: 108 RTGAEWNPPLSFSLASRGLSGQYVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSGSVS 167
Query: 130 -AGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINS 188
+ P D C ++V +LP E FR VK++ I DINDNAP FP + I++ +PEN+ +N+
Sbjct: 168 ISSSPSDS-CLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNT 226
Query: 189 KYTLP-AAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTY 247
+ + AVDPDVGINGVQ Y L+ +F LDV E G++ P LIV LDRE +D Y
Sbjct: 227 RLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQY 286
Query: 248 VMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATD 307
V + EDGG P +A L + ++D NDN P+F +++I V++ NA VGT + + A D
Sbjct: 287 VSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVD 346
Query: 308 ADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLM 367
D+G NA+I +S+S V ++ LFHL+ TG+I + + +HKL +LA+ G +
Sbjct: 347 KDLGTNAQITYSYSQKVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKLTILANGPGCI 406
Query: 368 PARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGR 427
PA LV++ V P I RYI N ++ V L E P+NT IA T+ D + + +
Sbjct: 407 PAVITALVSIIKVIFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFFTIRDPEGKY--K 464
Query: 428 VTCFTDHEIPFRLRPV--FSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLF 485
V C+ D E PFRL P ++N++LLE +DYE + Y + ++A ++ + ++
Sbjct: 465 VNCYLDGEGPFRLSPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNS--EGFHVKRVIK 522
Query: 486 IKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEF 545
+++ D+NDNAP+F Q + ++I ENNSP L K+ ATDADS +++Y LGPDAP F
Sbjct: 523 VQLLDDNDNAPIFLQPLIELTIEENNSPNAFLTKLYATDADSEERGQVSYFLGPDAPSYF 582
Query: 546 SLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHN 605
SLD TG+LTV +LDRE+++KY +T+ A D G PP S TV ++++D+NDNSP F +
Sbjct: 583 SLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINK 642
Query: 606 EYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDR 665
++ F+VPEN P +G +G+I+VTD D G N V LS+++++D F ID+ G++R +S DR
Sbjct: 643 DFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDR 702
Query: 666 EKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPGT 725
E+Q SYT +V+A DGG + SS+AK+TI ++D+NDN P+ + P N SY LVLPST PG+
Sbjct: 703 EQQSSYTLWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGS 762
Query: 726 VVFQVIAVDNDTGMNAEVRYSIVG--GNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLV 783
V +V AVD DTGMNA + YSI+G G + F ID +TGNITL E TD GLHR+LV
Sbjct: 763 PVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLV 822
Query: 784 KANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIE 823
K +D G P+ L S V+VNLFVN++V+N + I L+RK E
Sbjct: 823 KVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPE 862
>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
Length = 1072
Score = 607 bits (1564), Expect = e-173
Identities = 383/1033 (37%), Positives = 571/1033 (55%), Gaps = 95/1033 (9%)
Query: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTT 119
Y + EE P +V IGN+ DL + +T + + ++G ++I+ TGE+ T+
Sbjct: 36 YRLAEEGPADVRIGNVASDLGI-------VTGSGEVTFSLESGS-EYLKIDNLTGELSTS 87
Query: 120 GARIDREKL--CAGIPRDEHCFYEVEVAIL-PDEIF-RLVKIRFLIEDINDNAPLFPATV 175
RIDREKL C I + CF + EV+++ P + + L + + ++ DINDN P FP+ V
Sbjct: 88 ERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGQVIVLDINDNTPTFPSPV 147
Query: 176 INISIPENSAINSKYTLPAAVDPDVGINGVQNYELI----------KSQNIFGLDVIETP 225
+ +++ EN + + Y LP A D D G NG++ YEL+ +S+ D P
Sbjct: 148 LTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYP 207
Query: 226 EG-------------------------------DKMPQLIVQKELDREEKDTYVMK---- 250
G + +L V D E++ ++K
Sbjct: 208 GGGGNGASGGGSGGSKRRLDASEGGGGTNPGGRSSVFELQVADTPDGEKQPQLIVKGALD 267
Query: 251 ----------VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV 300
++V DGG P RSS AIL+V +TD NDN P F+++ E + EN+ GT +
Sbjct: 268 REQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPI 327
Query: 301 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL 360
QL A D D+G N +I + F ++ RRL L+ T+G +++ +DREE + V+
Sbjct: 328 LQLRAADLDVGVNGQIEYVFGAATESV-RRLLRLDETSGWLSVLHRIDREEVNQLRFTVM 386
Query: 361 ASDGGLMPA--RAMVLVNVTDVNDNVPSIDIRYIVN-PVNDTVV-LSENIPLNTKIALIT 416
A D G P +A V++N+ D NDNVPSI+IR I P+ D V ++E++ ++T IAL+
Sbjct: 387 ARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQ 446
Query: 417 VTDKDADHNGRVTCFTDHEIPFRLRPVFSNQ-------FLLENAAYLDYESTKEYAIKLL 469
V+D+D NG VTC ++PF+L+P + + L + LDYE+T+E+ + ++
Sbjct: 447 VSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSTPLDYEATREFNVVIV 506
Query: 470 AADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGP 529
A D+G P L+ + L +KV D NDN P+F QS V V PENN PG ++ V ATDADSG
Sbjct: 507 AVDSGSPSLSSNNSLIVKVGDTNDNPPMFGQSVVEVYFPENNIPGERVATVLATDADSGK 566
Query: 530 NAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVF 589
NAEI Y L F++D +G + V LDRE+ D+Y F + AKD G+P L + TV
Sbjct: 567 NAEIAYSLDSSVMGIFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVI 626
Query: 590 VSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFT 649
V + D+NDN P F + + FYV ENL + VG++TV D D G N+ ++L I + N+ F+
Sbjct: 627 VQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENNNIFS 686
Query: 650 IDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPP 709
I++ TG I +SFDRE Q +YTF VKA DGG RS++A V++ V+D NDN P + P
Sbjct: 687 IENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPT-VTLP 745
Query: 710 YNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLME 769
N SY L+ PS+N TVV V+A D+D G+NA++ YSIVGGN LF ID +G ++L+
Sbjct: 746 KNISYTLLPPSSNVRTVVATVLATDSDDGINADLNYSIVGGNPFKLFEIDPTSGVVSLVG 805
Query: 770 KCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPN 829
K GLHR++V+ ND GQP S + +V++FVNESV+NAT I+ + +S+ P+T +
Sbjct: 806 KLTQKHYGLHRLVVQVNDSGQP-SQSTTTLVHVFVNESVSNATAIDSQIARSLHIPLTQD 864
Query: 830 TEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVR-CRQAPHLKAAQKNMQNSEWAT 888
+ + I++ VAG +TV+++I I + R CR + ++ T
Sbjct: 865 IAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVVMARYCRSKNKNGYEAGKKDHEDFFT 924
Query: 889 PNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTM 948
P ++ K KK KK P L ++VT+E +K + D L + +M
Sbjct: 925 PQQHDKSKKPKKDKKNKKSKQP--LYSSIVTVEASKPNGQRYDSVNEKLS-----DSPSM 977
Query: 949 GKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETP-LNLKHHIIQELPLDNTFV-A 1006
G+Y V P SPDLARHYKS+SP P Q+ P++P KH +Q+LP NTFV A
Sbjct: 978 GRYRSVNG----GPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGA 1033
Query: 1007 CDSISNCSSSSSD 1019
D+IS S S+
Sbjct: 1034 GDNISIGSDHCSE 1046
>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
Length = 1069
Score = 607 bits (1564), Expect = e-173
Identities = 383/1033 (37%), Positives = 571/1033 (55%), Gaps = 95/1033 (9%)
Query: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTT 119
Y + EE P +V IGN+ DL + +T + + ++G ++I+ TGE+ T+
Sbjct: 36 YRLAEEGPADVRIGNVASDLGI-------VTGSGEVTFSLESGS-EYLKIDNLTGELSTS 87
Query: 120 GARIDREKL--CAGIPRDEHCFYEVEVAIL-PDEIF-RLVKIRFLIEDINDNAPLFPATV 175
RIDREKL C I + CF + EV+++ P + + L + + ++ DINDN P FP+ V
Sbjct: 88 ERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGQVIVLDINDNTPTFPSPV 147
Query: 176 INISIPENSAINSKYTLPAAVDPDVGINGVQNYELI----------KSQNIFGLDVIETP 225
+ +++ EN + + Y LP A D D G NG++ YEL+ +S+ D P
Sbjct: 148 LTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYP 207
Query: 226 EG-------------------------------DKMPQLIVQKELDREEKDTYVMK---- 250
G + +L V D E++ ++K
Sbjct: 208 GGGGNGASGGGSGGSKRRLDASEGGGGTNPGGRSSVFELQVADTPDGEKQPQLIVKGALD 267
Query: 251 ----------VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV 300
++V DGG P RSS AIL+V +TD NDN P F+++ E + EN+ GT +
Sbjct: 268 REQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPI 327
Query: 301 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL 360
QL A D D+G N +I + F ++ RRL L+ T+G +++ +DREE + V+
Sbjct: 328 LQLRAADLDVGVNGQIEYVFGAATESV-RRLLRLDETSGWLSVLHRIDREEVNQLRFTVM 386
Query: 361 ASDGGLMPA--RAMVLVNVTDVNDNVPSIDIRYIVN-PVNDTVV-LSENIPLNTKIALIT 416
A D G P +A V++N+ D NDNVPSI+IR I P+ D V ++E++ ++T IAL+
Sbjct: 387 ARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQ 446
Query: 417 VTDKDADHNGRVTCFTDHEIPFRLRPVFSNQ-------FLLENAAYLDYESTKEYAIKLL 469
V+D+D NG VTC ++PF+L+P + + L + LDYE+T+E+ + ++
Sbjct: 447 VSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSTPLDYEATREFNVVIV 506
Query: 470 AADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGP 529
A D+G P L+ + L +KV D NDN P+F QS V V PENN PG ++ V ATDADSG
Sbjct: 507 AVDSGSPSLSSNNSLIVKVGDTNDNPPMFGQSVVEVYFPENNIPGERVATVLATDADSGK 566
Query: 530 NAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVF 589
NAEI Y L F++D +G + V LDRE+ D+Y F + AKD G+P L + TV
Sbjct: 567 NAEIAYSLDSSVMGIFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVI 626
Query: 590 VSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFT 649
V + D+NDN P F + + FYV ENL + VG++TV D D G N+ ++L I + N+ F+
Sbjct: 627 VQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENNNIFS 686
Query: 650 IDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPP 709
I++ TG I +SFDRE Q +YTF VKA DGG RS++A V++ V+D NDN P + P
Sbjct: 687 IENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPT-VTLP 745
Query: 710 YNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLME 769
N SY L+ PS+N TVV V+A D+D G+NA++ YSIVGGN LF ID +G ++L+
Sbjct: 746 KNISYTLLPPSSNVRTVVATVLATDSDDGINADLNYSIVGGNPFKLFEIDPTSGVVSLVG 805
Query: 770 KCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPN 829
K GLHR++V+ ND GQP S + +V++FVNESV+NAT I+ + +S+ P+T +
Sbjct: 806 KLTQKHYGLHRLVVQVNDSGQP-SQSTTTLVHVFVNESVSNATAIDSQIARSLHIPLTQD 864
Query: 830 TEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVR-CRQAPHLKAAQKNMQNSEWAT 888
+ + I++ VAG +TV+++I I + R CR + ++ T
Sbjct: 865 IAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVVMARYCRSKNKNGYEAGKKDHEDFFT 924
Query: 889 PNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTM 948
P ++ K KK KK P L ++VT+E +K + D L + +M
Sbjct: 925 PQQHDKSKKPKKDKKNKKSKQP--LYSSIVTVEASKPNGQRYDSVNEKLS-----DSPSM 977
Query: 949 GKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETP-LNLKHHIIQELPLDNTFV-A 1006
G+Y V P SPDLARHYKS+SP P Q+ P++P KH +Q+LP NTFV A
Sbjct: 978 GRYRSVNG----GPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGA 1033
Query: 1007 CDSISNCSSSSSD 1019
D+IS S S+
Sbjct: 1034 GDNISIGSDHCSE 1046
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 583 bits (1504), Expect = e-166
Identities = 377/1016 (37%), Positives = 561/1016 (55%), Gaps = 55/1016 (5%)
Query: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTT 119
Y + EE P +V IGN+ DL + +T + + ++G ++I+ TGE+ T+
Sbjct: 36 YRLAEEGPADVRIGNVASDLGI-------VTGSGEVTFSLESGS-EYLKIDNLTGELSTS 87
Query: 120 GARIDREKL--CAGIPRDEHCFYEVEVAIL-PDEIF-RLVKIRFLIEDINDNAPLFPATV 175
RIDREKL C I + CF + EV+++ P + + L + + ++ DINDN P FP+ V
Sbjct: 88 ERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGQVIVLDINDNTPTFPSPV 147
Query: 176 INISIPENSAINSKYTLPAAVDPDVGINGVQNYELIK----------SQNIFGLDVIETP 225
+ +++ EN + + Y LP A D D G NG++ YEL++ S+ D P
Sbjct: 148 LTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGSGGESRRAGAADSAPYP 207
Query: 226 EGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHP-VFKET 284
G + D GG RSS LQV+ T + P + +
Sbjct: 208 GGGGNGASGGGSGGSKRRLDASEGGGGTNPGG---RSSVFELQVADTPDGEKQPQLIVKG 264
Query: 285 EIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIK 344
E + EN+ GT + QL A D D+G N +I + F ++ RRL L+ T+G +++
Sbjct: 265 VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV-RRLLRLDETSGWLSVL 323
Query: 345 EPLDREETPNHKLLVLASDGGLMPA--RAMVLVNVTDVNDNVPSIDIRYIVN-PVNDTVV 401
+DREE + V+A D G P +A V++N+ D NDNVPSI+IR I P+ D V
Sbjct: 324 HRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVA 383
Query: 402 -LSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQ-------FLLENA 453
++E++ ++T IAL+ V+D+D NG VTC ++PF+L+P + + L +
Sbjct: 384 NVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTS 443
Query: 454 AYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSP 513
LDYE+T+E+ + ++A D+G P L+ + L +KV D NDN P+F QS V V PENN P
Sbjct: 444 TPLDYEATREFNVVIVAVDSGSPSLSSNNSLIVKVGDTNDNPPMFGQSVVEVYFPENNIP 503
Query: 514 GIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTIL 573
G ++ V ATDADSG NAEI Y L F++D +G + V LDRE+ D+Y F +
Sbjct: 504 GERVATVLATDADSGKNAEIAYSLDSSVMGIFAIDPDSGDILVNTVLDREQTDRYEFKVN 563
Query: 574 AKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGD 633
AKD G+P L + TV V + D+NDN P F + + FYV ENL + VG++TV D D G
Sbjct: 564 AKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGR 623
Query: 634 NSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTI 693
N+ ++L I + N+ F+I++ TG I +SFDRE Q +YTF VKA DGG RS++A V++
Sbjct: 624 NAEMSLYIEENNNIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDPPRSATATVSL 683
Query: 694 NVVDVNDNKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTR 753
V+D NDN P + P N SY L+ PS+N TVV V+A D+D G+NA++ YSIVGGN
Sbjct: 684 FVMDENDNAPT-VTLPKNISYTLLPPSSNVRTVVATVLATDSDDGINADLNYSIVGGNPF 742
Query: 754 DLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATL 813
LF ID +G ++L+ K GLHR++V+ ND GQP S + +V++FVNESV+NAT
Sbjct: 743 KLFEIDPTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQP-SQSTTTLVHVFVNESVSNATA 801
Query: 814 INELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVR-CRQAP 872
I+ + +S+ P+T + + + I++ VAG +TV+++I I + R CR
Sbjct: 802 IDSQIARSLHIPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVVMARYCRSKN 861
Query: 873 HLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDVDSDG 932
+ ++ TP ++ K KK KK P L ++VT+E +K + D
Sbjct: 862 KNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQP--LYSSIVTVEASKPNGQRYDS 919
Query: 933 NRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETP-LNLK 991
L + +MG+Y V P SPDLARHYKS+SP P Q+ P++P K
Sbjct: 920 VNEKLS-----DSPSMGRYRSVNG----GPGSPDLARHYKSSSPLPTVQLHPQSPTAGKK 970
Query: 992 HHIIQELPLDNTFV-ACDSISNCSSSSSDPYSVSDCGYPVTTF-EVPVSVHTRPTD 1045
H +Q+LP NTFV A D+IS S S+ ++ Y F V SV ++P D
Sbjct: 971 HQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQTNNKYSKQPFRRVTFSVVSQPQD 1026
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 365 bits (937), Expect = e-100
Identities = 235/681 (34%), Positives = 356/681 (52%), Gaps = 54/681 (7%)
Query: 44 VLLVCVVF----HSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVY 99
++L+C+ F +GA++ +Y+I EE+ + +GN+ KDL L+ P + ++ +
Sbjct: 17 LVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLA--PRELAERGVR---IV 71
Query: 100 KTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRF 159
G L + +G + T G RIDRE+LCA R C V IL ++ +L I
Sbjct: 72 SRGRTQLFSLNPRSGSLITAG-RIDREELCAQSAR---CV--VSFNILVEDRVKLFGIEI 125
Query: 160 LIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGL 219
+ DINDNAP F A +++ I EN A ++ LP A+DPDVG+N +Q+Y+L +++ F L
Sbjct: 126 EVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKH-FSL 184
Query: 220 DVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHP 279
V G K P+L+++ LDREE+ + + + DGG P RS T ++ V+V D NDN P
Sbjct: 185 RVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAP 244
Query: 280 VFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTG 339
VF E VS+PEN PVGT + + ATD D G N ++ +SF L + F LN TG
Sbjct: 245 VFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLK-FQLNKYTG 303
Query: 340 LITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDT 399
I I E LD EET +++ + A DGG A A VL+ V DVNDN P + I + +PV
Sbjct: 304 EIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPV--- 360
Query: 400 VVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYE 459
+E+ PL T +AL+ V D D++ NG+VTC +PF+L + + L LD E
Sbjct: 361 ---TEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDRE 417
Query: 460 STKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMK 519
Y I + A D G PPL+ A ++V D NDN P F+Q IPENN+ G +
Sbjct: 418 QVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFS 477
Query: 520 VSATDADSGPNAEINYLLGPDA------PPEFSLDRRTGMLTVVKKLDREKEDKYLFTIL 573
V+A D DS NA+I Y L D S++ TG+L ++ D E+ + +
Sbjct: 478 VTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVT 537
Query: 574 AKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGL---------- 623
A D+G PPL+SNV++ + ++DQNDN+P + LP G+ G+
Sbjct: 538 ASDSGDPPLSSNVSLSLFVLDQNDNAPEILY--------PALPTDGSTGVELAPRSAEPG 589
Query: 624 -----ITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVK 676
+ D D G N+ ++ +L ++ F + TG +R + + V
Sbjct: 590 YLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVA 649
Query: 677 AEDGGRVSRSSSAKVTINVVD 697
+D G+ S++ +T+ V D
Sbjct: 650 VQDHGQPPLSATVTLTVAVAD 670
Score = 242 bits (618), Expect = 1e-63
Identities = 197/670 (29%), Positives = 312/670 (46%), Gaps = 71/670 (10%)
Query: 233 LIVQKELDREE------KDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEI 286
LI +DREE + + VED R +++ VTD NDN P F+ +
Sbjct: 88 LITAGRIDREELCAQSARCVVSFNILVED-----RVKLFGIEIEVTDINDNAPKFQAENL 142
Query: 287 EVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEP 346
+V I EN G A D D+G N+ + S + F L + +K P
Sbjct: 143 DVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLS------PNKHFSLRVQSRANGVKYP 196
Query: 347 -------LDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVN 397
LDREE H L++ ASDGG L +V V V D NDN P +
Sbjct: 197 ELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEY----- 251
Query: 398 DTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIP------FRLRPVFSNQFLLE 451
V + EN+P+ T++ +T TD+D NG VT ++ ++P F+L + E
Sbjct: 252 -RVSVPENLPVGTQLLTVTATDRDEGANGEVT-YSFRKLPDTQLLKFQLNKYTGEIKISE 309
Query: 452 NAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENN 511
N LDYE T Y I++ A D G +A + I V+D NDN+P T + + + E++
Sbjct: 310 N---LDYEETGFYEIEIQAEDGGA--YLATAKVLITVEDVNDNSPELTITSLFSPVTEDS 364
Query: 512 SPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGM---LTVVKKLDREKEDKY 568
G + ++ D DS N ++ + P F L++ L + + LDRE+ Y
Sbjct: 365 PLGTVVALLNVHDLDSEQNGQVTCSILAYLP--FKLEKSIDSYYRLVIHRALDREQVSSY 422
Query: 569 LFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTD 628
T+ A D G PPL++ + + D NDN P F+ Y Y+PEN R ++ +T D
Sbjct: 423 NITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALD 482
Query: 629 PDYGDNSAVTLSILDE-------NDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
PD +N+ + S+ ++ + +I+S TGV+ SFD E+ V A D G
Sbjct: 483 PDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSG 542
Query: 682 RVSRSSSAKVTINVVDVNDNKPVFIVPPY----NYSYELVLPSTNPGTVVFQVIAVDNDT 737
SS+ +++ V+D NDN P + P + EL S PG +V +V+AVD D+
Sbjct: 543 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDS 602
Query: 738 GMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSV 797
G NA + Y ++ + LFA+ + TG + D ++V D GQP L +
Sbjct: 603 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQP-PLSAT 661
Query: 798 VIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVV 857
V + + V +S+ ++ +L S E+P N+E +D++ Y+ + VAAV+
Sbjct: 662 VTLTVAVADSIPQ--VLADL--GSFESPA--NSETSDLTL----YLVVAVAAVSCVFLAF 711
Query: 858 VVIFITAVVR 867
V++ + +R
Sbjct: 712 VIVLLAHRLR 721
Score = 108 bits (270), Expect = 3e-23
Identities = 93/306 (30%), Positives = 137/306 (44%), Gaps = 30/306 (9%)
Query: 545 FSLDRRTGMLTVVKKLDREK------EDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN 598
FSL+ R+G L ++DRE+ F IL +D + + + D NDN
Sbjct: 79 FSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDR-----VKLFGIEIEVTDINDN 133
Query: 599 SPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT---G 655
+P F + EN+ L DPD G NS + L N F++ Q+ G
Sbjct: 134 APKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQ-LSPNKHFSLRVQSRANG 192
Query: 656 VIRPNI----SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYN 711
V P + S DRE++ + + A DGG RS + V++ V D NDN PVF +P Y
Sbjct: 193 VKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYR 252
Query: 712 YSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDL--FAIDQETGNITLME 769
S LP GT + V A D D G N EV YS L F +++ TG I + E
Sbjct: 253 VSVPENLP---VGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISE 309
Query: 770 KCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPN 829
D + G + + ++A D G + V+I VN++ EL S+ +PVT +
Sbjct: 310 NLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSP------ELTITSLFSPVTED 363
Query: 830 TEIADV 835
+ + V
Sbjct: 364 SPLGTV 369
>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
[Homo sapiens]
Length = 850
Score = 365 bits (937), Expect = e-100
Identities = 235/681 (34%), Positives = 356/681 (52%), Gaps = 54/681 (7%)
Query: 44 VLLVCVVF----HSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVY 99
++L+C+ F +GA++ +Y+I EE+ + +GN+ KDL L+ P + ++ +
Sbjct: 17 LVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLA--PRELAERGVR---IV 71
Query: 100 KTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRF 159
G L + +G + T G RIDRE+LCA R C V IL ++ +L I
Sbjct: 72 SRGRTQLFSLNPRSGSLITAG-RIDREELCAQSAR---CV--VSFNILVEDRVKLFGIEI 125
Query: 160 LIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGL 219
+ DINDNAP F A +++ I EN A ++ LP A+DPDVG+N +Q+Y+L +++ F L
Sbjct: 126 EVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKH-FSL 184
Query: 220 DVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHP 279
V G K P+L+++ LDREE+ + + + DGG P RS T ++ V+V D NDN P
Sbjct: 185 RVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAP 244
Query: 280 VFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTG 339
VF E VS+PEN PVGT + + ATD D G N ++ +SF L + F LN TG
Sbjct: 245 VFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLK-FQLNKYTG 303
Query: 340 LITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDT 399
I I E LD EET +++ + A DGG A A VL+ V DVNDN P + I + +PV
Sbjct: 304 EIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPV--- 360
Query: 400 VVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYE 459
+E+ PL T +AL+ V D D++ NG+VTC +PF+L + + L LD E
Sbjct: 361 ---TEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDRE 417
Query: 460 STKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMK 519
Y I + A D G PPL+ A ++V D NDN P F+Q IPENN+ G +
Sbjct: 418 QVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFS 477
Query: 520 VSATDADSGPNAEINYLLGPDA------PPEFSLDRRTGMLTVVKKLDREKEDKYLFTIL 573
V+A D DS NA+I Y L D S++ TG+L ++ D E+ + +
Sbjct: 478 VTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVT 537
Query: 574 AKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGL---------- 623
A D+G PPL+SNV++ + ++DQNDN+P + LP G+ G+
Sbjct: 538 ASDSGDPPLSSNVSLSLFVLDQNDNAPEILY--------PALPTDGSTGVELAPRSAEPG 589
Query: 624 -----ITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVK 676
+ D D G N+ ++ +L ++ F + TG +R + + V
Sbjct: 590 YLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVA 649
Query: 677 AEDGGRVSRSSSAKVTINVVD 697
+D G+ S++ +T+ V D
Sbjct: 650 VQDHGQPPLSATVTLTVAVAD 670
Score = 242 bits (618), Expect = 1e-63
Identities = 197/670 (29%), Positives = 312/670 (46%), Gaps = 71/670 (10%)
Query: 233 LIVQKELDREE------KDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEI 286
LI +DREE + + VED R +++ VTD NDN P F+ +
Sbjct: 88 LITAGRIDREELCAQSARCVVSFNILVED-----RVKLFGIEIEVTDINDNAPKFQAENL 142
Query: 287 EVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEP 346
+V I EN G A D D+G N+ + S + F L + +K P
Sbjct: 143 DVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLS------PNKHFSLRVQSRANGVKYP 196
Query: 347 -------LDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVN 397
LDREE H L++ ASDGG L +V V V D NDN P +
Sbjct: 197 ELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEY----- 251
Query: 398 DTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIP------FRLRPVFSNQFLLE 451
V + EN+P+ T++ +T TD+D NG VT ++ ++P F+L + E
Sbjct: 252 -RVSVPENLPVGTQLLTVTATDRDEGANGEVT-YSFRKLPDTQLLKFQLNKYTGEIKISE 309
Query: 452 NAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENN 511
N LDYE T Y I++ A D G +A + I V+D NDN+P T + + + E++
Sbjct: 310 N---LDYEETGFYEIEIQAEDGGA--YLATAKVLITVEDVNDNSPELTITSLFSPVTEDS 364
Query: 512 SPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGM---LTVVKKLDREKEDKY 568
G + ++ D DS N ++ + P F L++ L + + LDRE+ Y
Sbjct: 365 PLGTVVALLNVHDLDSEQNGQVTCSILAYLP--FKLEKSIDSYYRLVIHRALDREQVSSY 422
Query: 569 LFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTD 628
T+ A D G PPL++ + + D NDN P F+ Y Y+PEN R ++ +T D
Sbjct: 423 NITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALD 482
Query: 629 PDYGDNSAVTLSILDE-------NDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
PD +N+ + S+ ++ + +I+S TGV+ SFD E+ V A D G
Sbjct: 483 PDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSG 542
Query: 682 RVSRSSSAKVTINVVDVNDNKPVFIVPPY----NYSYELVLPSTNPGTVVFQVIAVDNDT 737
SS+ +++ V+D NDN P + P + EL S PG +V +V+AVD D+
Sbjct: 543 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDS 602
Query: 738 GMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSV 797
G NA + Y ++ + LFA+ + TG + D ++V D GQP L +
Sbjct: 603 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQP-PLSAT 661
Query: 798 VIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVV 857
V + + V +S+ ++ +L S E+P N+E +D++ Y+ + VAAV+
Sbjct: 662 VTLTVAVADSIPQ--VLADL--GSFESPA--NSETSDLTL----YLVVAVAAVSCVFLAF 711
Query: 858 VVIFITAVVR 867
V++ + +R
Sbjct: 712 VIVLLAHRLR 721
Score = 108 bits (270), Expect = 3e-23
Identities = 93/306 (30%), Positives = 137/306 (44%), Gaps = 30/306 (9%)
Query: 545 FSLDRRTGMLTVVKKLDREK------EDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN 598
FSL+ R+G L ++DRE+ F IL +D + + + D NDN
Sbjct: 79 FSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDR-----VKLFGIEIEVTDINDN 133
Query: 599 SPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQT---G 655
+P F + EN+ L DPD G NS + L N F++ Q+ G
Sbjct: 134 APKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQ-LSPNKHFSLRVQSRANG 192
Query: 656 VIRPNI----SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYN 711
V P + S DRE++ + + A DGG RS + V++ V D NDN PVF +P Y
Sbjct: 193 VKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYR 252
Query: 712 YSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDL--FAIDQETGNITLME 769
S LP GT + V A D D G N EV YS L F +++ TG I + E
Sbjct: 253 VSVPENLP---VGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISE 309
Query: 770 KCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPN 829
D + G + + ++A D G + V+I VN++ EL S+ +PVT +
Sbjct: 310 NLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSP------ELTITSLFSPVTED 363
Query: 830 TEIADV 835
+ + V
Sbjct: 364 SPLGTV 369
>gi|14589929 protocadherin 18 precursor [Homo sapiens]
Length = 1135
Score = 360 bits (924), Expect = 4e-99
Identities = 226/660 (34%), Positives = 360/660 (54%), Gaps = 27/660 (4%)
Query: 40 YIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLN--LSLIPNKSLTTTMQFKL 97
++FA+L+V + Y I EE +I L +D+ L +PN S T++F+
Sbjct: 12 FVFALLIVSFNHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPNPS---TVRFRA 68
Query: 98 VYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKI 157
+ + G+ PL+ + ED GEI + GA IDRE+LC ++ +C E +V LP E +L I
Sbjct: 69 MQR-GNSPLLVVNEDNGEI-SIGATIDREQLCQ---KNLNCSIEFDVITLPTEHLQLFHI 123
Query: 158 RFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIF 217
+ DINDN+P F ++I I I E++A+ ++ L +A DPDVG N + Y L + + F
Sbjct: 124 EVEVLDINDNSPQFSRSLIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSL-SANDFF 182
Query: 218 GLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDN 277
++V +G K +LIV +ELDRE K +Y +++ D G PQRS ++IL++S++D+NDN
Sbjct: 183 NIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSILKISISDSNDN 242
Query: 278 HPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNAT 337
P F++ + + EN+PVGT + L+ATD D G N KI +SFS+ VS F +++
Sbjct: 243 SPAFEQQSYIIQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIMETFKIDSE 302
Query: 338 TGLITIKEPLDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNP 395
G +T+ + +D E T ++++ V A D G +PA +++ V DVNDN P I+I +
Sbjct: 303 RGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSPG 362
Query: 396 VNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAY 455
+ + E P++T +AL+ V DKD+ NG + C F+L+ + N +L+ A
Sbjct: 363 KEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTNAT 422
Query: 456 LDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGI 515
LD E EY++ ++A D G P L+ +++ D NDN P F +S I ENNSPG
Sbjct: 423 LDREKRSEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVISENNSPGA 482
Query: 516 QLMKVSATDADSGPNAEINY------LLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYL 569
+ V+ATD D G N ++ Y +LG ++D G + ++ D E+ +
Sbjct: 483 YITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQIT 542
Query: 570 FTILAKDNGVP-PLTSNVTVFVSIIDQNDNSPV-----FTHNEYKFYVPENLPRHGTVGL 623
F + A+D G P L SN TV ++IID+NDN PV +N + +P+ V
Sbjct: 543 FVVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAESGFHVTR 602
Query: 624 ITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
I D D G N+ ++ +I+ N++ F ID ++ I N+S D + V +D G
Sbjct: 603 IRAIDRDSGVNAELSCAIVAGNEENIFIIDPRSCDIHTNVSMDSVPYTEWELSVIIQDKG 662
Score = 234 bits (596), Expect = 4e-61
Identities = 188/628 (29%), Positives = 288/628 (45%), Gaps = 48/628 (7%)
Query: 267 LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFS-NLVS 325
++V V D NDN P F + I + I E+A VGT + A D D+GEN+ +S S N
Sbjct: 123 IEVEVLDINDNSPQFSRSLIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDFF 182
Query: 326 NIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARA---MVLVNVTDVND 382
NI R A + + LDRE +++L + ASD G+ P R+ ++ ++++D ND
Sbjct: 183 NIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGV-PQRSGSSILKISISDSND 241
Query: 383 NVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVT-CFTDHEIPFRLR 441
N P+ + + + + L EN P+ T + + TD D NG++ F+ H P +
Sbjct: 242 NSPAFEQQSYI------IQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIME 295
Query: 442 P--VFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFT 499
+ S + L +DYE TK Y I + A D G + + IKV D NDN P
Sbjct: 296 TFKIDSERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEIN 355
Query: 500 QSFVTVS------IPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGM 553
+ ++ I E + + V D DSG N EI L +
Sbjct: 356 INLMSPGKEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNY 415
Query: 554 LTVVKK-LDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVP 612
L + LDREK +Y T++A+D G P L++ V I D NDN P F + Y+F +
Sbjct: 416 LILTNATLDREKRSEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVIS 475
Query: 613 ENLPRHGTVGLITVTDPDYGDNSAVTLSILDE-------NDDFTIDSQTGVIRPNISFDR 665
EN + +T TDPD G+N VT +IL+ TID G I FD
Sbjct: 476 ENNSPGAYITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDH 535
Query: 666 EKQESYTFYVKAEDGGRVSRS-SSAKVTINVVDVNDNKPVFIVPPY-NYSYELVLPS-TN 722
E+ TF V+A DGG + S+ V + ++D NDN PV I P N + E+ +P
Sbjct: 536 EEVSQITFVVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAE 595
Query: 723 PGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVL 782
G V ++ A+D D+G+NAE+ +IV GN ++F ID + +I D +
Sbjct: 596 SGFHVTRIRAIDRDSGVNAELSCAIVAGNEENIFIIDPRSCDIHTNVSMDSVPYTEWELS 655
Query: 783 VKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDY 842
V D G P L + V++ + E + T +T + VS + D
Sbjct: 656 VIIQDKGNP-QLHTKVLLKCMIFEYAESVT----------------STAMTSVSQASLDV 698
Query: 843 VKILVAAVAGTITVVVVIFITAVVRCRQ 870
I++ ++ V++VI + RC +
Sbjct: 699 SMIIIISLGAICAVLLVIMVLFATRCNR 726
Score = 177 bits (450), Expect = 4e-44
Identities = 157/567 (27%), Positives = 238/567 (41%), Gaps = 48/567 (8%)
Query: 331 LFHLNATTGLITIKEPLDREETPNHKL-LVLASDGGLMPARAMVL----VNVTDVNDNVP 385
L +N G I+I +DRE+ L + D +P + L V V D+NDN P
Sbjct: 76 LLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQLFHIEVEVLDINDNSP 135
Query: 386 SIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTD----HEIPFRLR 441
I + +SE+ + T+I L + D D N T I R R
Sbjct: 136 QFSRSLI------PIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDFFNIEVRTR 189
Query: 442 PVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQS 501
+ L LD E Y ++L A+D G P + S++L I + D NDN+P F Q
Sbjct: 190 TDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSILKISISDSNDNSPAFEQQ 249
Query: 502 FVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE----FSLDRRTGMLTVV 557
+ + EN+ G L+ ++ATD D G N +I Y P+ F +D G LT+
Sbjct: 250 SYIIQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIMETFKIDSERGHLTLF 309
Query: 558 KKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHN------EYKFYV 611
K++D E Y + A+D G + ++ + + ++D NDN P N E Y+
Sbjct: 310 KQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSPGKEEISYI 369
Query: 612 PENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDS---QTGVIRPNISFDREKQ 668
E P V L+ V D D G N + L + F + +I N + DREK+
Sbjct: 370 FEGDPIDTFVALVRVQDKDSGLNGEIVCK-LHGHGHFKLQKTYENNYLILTNATLDREKR 428
Query: 669 ESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTN-PGTVV 727
Y+ V AED G S S+ T+ + D+NDN P F YE V+ N PG +
Sbjct: 429 SEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHF----QRSRYEFVISENNSPGAYI 484
Query: 728 FQVIAVDNDTGMNAEVRYS-----IVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVL 782
V A D D G N +V Y+ I+G + ID G I + D ++ +
Sbjct: 485 TTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFV 544
Query: 783 VKANDLGQPDSLFS-VVIVNLFVNESVTNATLINELVRKSIEAPVTPN--------TEIA 833
V+A D G P L S +V ++E+ +I +R + P T I
Sbjct: 545 VEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAESGFHVTRIR 604
Query: 834 DVSSPTSDYVKILVAAVAGTITVVVVI 860
+ + ++ A VAG + +I
Sbjct: 605 AIDRDSGVNAELSCAIVAGNEENIFII 631
>gi|157426847 protocadherin 19 isoform a [Homo sapiens]
Length = 1101
Score = 355 bits (911), Expect = 1e-97
Identities = 235/669 (35%), Positives = 362/669 (54%), Gaps = 36/669 (5%)
Query: 44 VLLVCVVFHSGAQEKN--YTIREEIPENVLIGNLLKDLN---LSLIPNKSLTTTMQFKLV 98
+LL+ +++ A N Y++ EE +I N+ KD +L P ++ F++V
Sbjct: 9 LLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASA----FRVV 64
Query: 99 YKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIR 158
+ L+ I +G + T +IDR+ LC P+ C +EV EI ++K+
Sbjct: 65 SNSAP-HLVDINPSSG-LLVTKQKIDRDLLCRQSPK---CIISLEVMSSSMEIC-VIKVE 118
Query: 159 FLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFG 218
I+D+NDNAP FPA I + I E ++ ++ L +A DPD G GVQ YEL ++ +FG
Sbjct: 119 --IKDLNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNE-LFG 175
Query: 219 LDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNH 278
L++ +G + +L+V+K LDRE + Y ++ DGG P R T L + VTD+NDN+
Sbjct: 176 LEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNN 235
Query: 279 PVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATT 338
PVF E+ VS+PEN+P T V +L+A+D D G N ++ +SF V++ R LF ++ +
Sbjct: 236 PVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHS 295
Query: 339 GLITIKEPLDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPV 396
GL+T+ LD EE ++L V A D G +PA V V+V D NDN P I+ +++
Sbjct: 296 GLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVIN---LLSVN 352
Query: 397 NDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYL 456
++ V +SE+ P IAL+ V+D+D+ NGRV C +PFRL+ S +L + L
Sbjct: 353 SELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGR-L 411
Query: 457 DYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQ 516
D E +Y + + A D G P L + + + DENDN P F++ + V + ENN+PG
Sbjct: 412 DREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAY 471
Query: 517 LMKVSATDADSGPNAEINYLLGP----DAP--PEFSLDRRTGMLTVVKKLDREKEDKYLF 570
L+ VSA D D G N ++Y + P D P S++ +G + ++ + E+ + F
Sbjct: 472 LLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEF 531
Query: 571 TILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFT-----HNEYKFYVPENLPRHGTVGLIT 625
+LAKD G+P L SN TV V I+D NDN+PV T + + Y+P N V ++
Sbjct: 532 KVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVK 591
Query: 626 VTDPDYGDNSAVTLSILD-ENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVS 684
D D G+N VT + + + F ID G +R +F + SY V A D G+ S
Sbjct: 592 AEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTS 651
Query: 685 RSSSAKVTI 693
S+SA V I
Sbjct: 652 LSASALVLI 660
Score = 216 bits (551), Expect = 7e-56
Identities = 198/740 (26%), Positives = 320/740 (43%), Gaps = 70/740 (9%)
Query: 233 LIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE 292
L+ ++++DR+ K + +++V + D NDN P F +IE+ I E
Sbjct: 81 LVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISE 140
Query: 293 NAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATT-------GLITIKE 345
A GT + A D D G + + LF L T + +++
Sbjct: 141 AASPGTRIPLDSAYDPDSGSFGVQTYELT------PNELFGLEIKTRGDGSRFAELVVEK 194
Query: 346 PLDREETPNHKLLVLASDGGLMPARAMV--LVNVTDVNDNVPSIDIRYIVNPVNDTVVLS 403
LDRE ++ + A DGG P V + VTD NDN P + + V +
Sbjct: 195 SLDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNNP------VFSESTYAVSVP 248
Query: 404 ENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS---NQFLLENAAYLDYES 460
EN P NT + + +D D NG+V + R R +F + L+ LDYE
Sbjct: 249 ENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEE 308
Query: 461 TKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVT---VSIPENNSPGIQL 517
Y + + A D G + + + V D NDN PV V V + E+ PG +
Sbjct: 309 GHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVI 368
Query: 518 MKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDN 577
V +D DSG N + L + P + V +LDRE+ D+Y TI A+D
Sbjct: 369 ALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDG 428
Query: 578 GVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAV 637
GVP L S + V I D+NDN P F+ Y+ V EN + ++ DPD G N +V
Sbjct: 429 GVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSV 488
Query: 638 TLSILDEN-------DDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAK 690
+ I+ +I+ +G I SF+ E+ +++ F V A+DGG S S+A
Sbjct: 489 SYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNAT 548
Query: 691 VTINVVDVNDNKPVFIVPP-YNYSYELVLP-STNPGTVVFQVIAVDNDTGMNAEVRYSIV 748
V + ++DVNDN PV PP N + E+ +P ++ G +V V A D D G N V Y +
Sbjct: 549 VRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMT 608
Query: 749 GGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESV 808
G+ R F IDQ G + + + ++V A+D G+ SL + +V ++++ ++
Sbjct: 609 EGD-RGFFEIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGK-TSLSASALVLIYLSPAL 666
Query: 809 TNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRC 868
A S + + I + A+ ++ V I ++C
Sbjct: 667 D-----------------------AQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKC 703
Query: 869 RQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDV 928
++ + + N + +E++ + KK KKKK S ++ L +EET +V
Sbjct: 704 KR-DNKEIRTYNCRIAEYSYGH--------QKKSSKKKKISKNDIRLVPRDVEETDKMNV 754
Query: 929 DSDGNRVTLDLPIDLEEQTM 948
S + + D +QT+
Sbjct: 755 VSCSSLTSSLNYFDYHQQTL 774
>gi|157426845 protocadherin 19 isoform b [Homo sapiens]
Length = 1100
Score = 355 bits (911), Expect = 1e-97
Identities = 235/669 (35%), Positives = 362/669 (54%), Gaps = 36/669 (5%)
Query: 44 VLLVCVVFHSGAQEKN--YTIREEIPENVLIGNLLKDLN---LSLIPNKSLTTTMQFKLV 98
+LL+ +++ A N Y++ EE +I N+ KD +L P ++ F++V
Sbjct: 9 LLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASA----FRVV 64
Query: 99 YKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIR 158
+ L+ I +G + T +IDR+ LC P+ C +EV EI ++K+
Sbjct: 65 SNSAP-HLVDINPSSG-LLVTKQKIDRDLLCRQSPK---CIISLEVMSSSMEIC-VIKVE 118
Query: 159 FLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFG 218
I+D+NDNAP FPA I + I E ++ ++ L +A DPD G GVQ YEL ++ +FG
Sbjct: 119 --IKDLNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNE-LFG 175
Query: 219 LDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNH 278
L++ +G + +L+V+K LDRE + Y ++ DGG P R T L + VTD+NDN+
Sbjct: 176 LEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNN 235
Query: 279 PVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATT 338
PVF E+ VS+PEN+P T V +L+A+D D G N ++ +SF V++ R LF ++ +
Sbjct: 236 PVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHS 295
Query: 339 GLITIKEPLDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPV 396
GL+T+ LD EE ++L V A D G +PA V V+V D NDN P I+ +++
Sbjct: 296 GLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVIN---LLSVN 352
Query: 397 NDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYL 456
++ V +SE+ P IAL+ V+D+D+ NGRV C +PFRL+ S +L + L
Sbjct: 353 SELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGR-L 411
Query: 457 DYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQ 516
D E +Y + + A D G P L + + + DENDN P F++ + V + ENN+PG
Sbjct: 412 DREQHDQYNLTIQARDGGVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAY 471
Query: 517 LMKVSATDADSGPNAEINYLLGP----DAP--PEFSLDRRTGMLTVVKKLDREKEDKYLF 570
L+ VSA D D G N ++Y + P D P S++ +G + ++ + E+ + F
Sbjct: 472 LLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEF 531
Query: 571 TILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFT-----HNEYKFYVPENLPRHGTVGLIT 625
+LAKD G+P L SN TV V I+D NDN+PV T + + Y+P N V ++
Sbjct: 532 KVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVK 591
Query: 626 VTDPDYGDNSAVTLSILD-ENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVS 684
D D G+N VT + + + F ID G +R +F + SY V A D G+ S
Sbjct: 592 AEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTS 651
Query: 685 RSSSAKVTI 693
S+SA V I
Sbjct: 652 LSASALVLI 660
Score = 216 bits (551), Expect = 7e-56
Identities = 198/740 (26%), Positives = 320/740 (43%), Gaps = 70/740 (9%)
Query: 233 LIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE 292
L+ ++++DR+ K + +++V + D NDN P F +IE+ I E
Sbjct: 81 LVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISE 140
Query: 293 NAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATT-------GLITIKE 345
A GT + A D D G + + LF L T + +++
Sbjct: 141 AASPGTRIPLDSAYDPDSGSFGVQTYELT------PNELFGLEIKTRGDGSRFAELVVEK 194
Query: 346 PLDREETPNHKLLVLASDGGLMPARAMV--LVNVTDVNDNVPSIDIRYIVNPVNDTVVLS 403
LDRE ++ + A DGG P V + VTD NDN P + + V +
Sbjct: 195 SLDRETQSHYSFRITALDGGDPPRLGTVGLSIKVTDSNDNNP------VFSESTYAVSVP 248
Query: 404 ENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS---NQFLLENAAYLDYES 460
EN P NT + + +D D NG+V + R R +F + L+ LDYE
Sbjct: 249 ENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTVTGALDYEE 308
Query: 461 TKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVT---VSIPENNSPGIQL 517
Y + + A D G + + + V D NDN PV V V + E+ PG +
Sbjct: 309 GHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLSVNSELVEVSESAPPGYVI 368
Query: 518 MKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDN 577
V +D DSG N + L + P + V +LDRE+ D+Y TI A+D
Sbjct: 369 ALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDG 428
Query: 578 GVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAV 637
GVP L S + V I D+NDN P F+ Y+ V EN + ++ DPD G N +V
Sbjct: 429 GVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSV 488
Query: 638 TLSILDEN-------DDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAK 690
+ I+ +I+ +G I SF+ E+ +++ F V A+DGG S S+A
Sbjct: 489 SYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNAT 548
Query: 691 VTINVVDVNDNKPVFIVPP-YNYSYELVLP-STNPGTVVFQVIAVDNDTGMNAEVRYSIV 748
V + ++DVNDN PV PP N + E+ +P ++ G +V V A D D G N V Y +
Sbjct: 549 VRVIILDVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMT 608
Query: 749 GGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESV 808
G+ R F IDQ G + + + ++V A+D G+ SL + +V ++++ ++
Sbjct: 609 EGD-RGFFEIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGK-TSLSASALVLIYLSPAL 666
Query: 809 TNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRC 868
A S + + I + A+ ++ V I ++C
Sbjct: 667 D-----------------------AQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKC 703
Query: 869 RQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDV 928
++ + + N + +E++ + KK KKKK S ++ L +EET +V
Sbjct: 704 KR-DNKEIRTYNCRIAEYSYGH--------QKKSSKKKKISKNDIRLVPRDVEETDKMNV 754
Query: 929 DSDGNRVTLDLPIDLEEQTM 948
S + + D +QT+
Sbjct: 755 VSCSSLTSSLNYFDYHQQTL 774
>gi|94538350 protocadherin 17 precursor [Homo sapiens]
Length = 1159
Score = 355 bits (910), Expect = 2e-97
Identities = 241/699 (34%), Positives = 366/699 (52%), Gaps = 51/699 (7%)
Query: 59 NYTIREEIPENVLIGNLLKDLNLS--LIPNK----SLTTTMQFKLVYKTGDVPLIRIEED 112
NY++ EE +IGN+ +D L L P + + + ++++ + L+ ++ D
Sbjct: 22 NYSVPEEQGAGTVIGNIGRDARLQPGLPPAERGGGGRSKSGSYRVLENSAP-HLLDVDAD 80
Query: 113 TGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFP 172
+G ++T RIDRE LC + C +EV EI ++K+ I+DINDNAP F
Sbjct: 81 SGLLYTK-QRIDRESLCR---HNAKCQLSLEVFANDKEIC-MIKVE--IQDINDNAPSFS 133
Query: 173 ATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQN-IFGLDVIETPEGDKMP 231
+ I + I EN+A +++ L +A DPD G NG++ Y L + + +FGLDV +G K P
Sbjct: 134 SDQIEMDISENAAPGTRFPLTSAHDPDAGENGLRTYLLTRDDHGLFGLDVKSRGDGTKFP 193
Query: 232 QLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIP 291
+L++QK LDRE+++ + + + DGG P RS+T + V V D+NDN PVF+ V +P
Sbjct: 194 ELVIQKALDREQQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELP 253
Query: 292 ENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREE 351
ENAP+GT V L+ATDAD G N ++ +SFS+ V + R LF ++ TGLI +K LD EE
Sbjct: 254 ENAPLGTVVIDLNATDADEGPNGEVLYSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEE 313
Query: 352 TPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLN 409
++ V A D G +PA V V + D NDN PSI + LSE P
Sbjct: 314 NGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAPSIGFVSVRQG-----ALSEAAPPG 368
Query: 410 TKIALITVTDKDADHNGRVTCFT---------------DHEIPFRLRPVFSNQFLLENAA 454
T IAL+ VTD+D+ NG++ C +PF+L + N + +
Sbjct: 369 TVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGGGLGGPGGSVPFKLEENYDNFYTVVTDR 428
Query: 455 YLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPG 514
LD E+ EY + ++A D G PPLN + IK+ DENDN P FT+ + + ENN PG
Sbjct: 429 PLDRETQDEYNVTIVARDGGSPPLNSTKSFAIKILDENDNPPRFTKGLYVLQVHENNIPG 488
Query: 515 IQLMKVSATDADSGPNAEINYLLGPDAPPEFSL------DRRTGMLTVVKKLDREKEDKY 568
L V A D D G N ++Y + P + S+ + G + ++ + E+ +
Sbjct: 489 EYLGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNFEQTKAF 548
Query: 569 LFTILAKDNGVPP-LTSNVTVFVSIIDQNDNSPVFT-----HNEYKFYVPENLPRHGTVG 622
F +LAKD+G P L SN TV V+++D NDN+PV ++ + VP N V
Sbjct: 549 EFKVLAKDSGAPAHLESNATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVS 608
Query: 623 LITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDG 680
+ D D+G++ +T I+D NDD F ID +G IR F + VK D
Sbjct: 609 TVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDH 668
Query: 681 GRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLP 719
G+ + S+ AK+ I V + + V V + +++ LP
Sbjct: 669 GKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQHHWDMSLP 707
Score = 253 bits (646), Expect = 7e-67
Identities = 234/816 (28%), Positives = 362/816 (44%), Gaps = 101/816 (12%)
Query: 168 APLFPATVINISIPENSAINS-----------KYTLPAAVDPDVGINGVQNYELIKSQNI 216
AP +N S+PE + + LP A G + +Y ++++
Sbjct: 13 APALTLKNLNYSVPEEQGAGTVIGNIGRDARLQPGLPPAERGGGGRSKSGSYRVLENSAP 72
Query: 217 FGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTND 276
LDV + G L ++ +DRE + K ++ F +++V + D ND
Sbjct: 73 HLLDV-DADSG----LLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVEIQDIND 127
Query: 277 NHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNA 336
N P F +IE+ I ENA GT A D D GEN + L++ LF L+
Sbjct: 128 NAPSFSSDQIEMDISENAAPGTRFPLTSAHDPDAGENGLRTY----LLTRDDHGLFGLDV 183
Query: 337 TTG-------LITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVT--DVNDNVPSI 387
+ + I++ LDRE+ +H L++ A DGG P A V +NV D NDN P
Sbjct: 184 KSRGDGTKFPELVIQKALDREQQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDNSPVF 243
Query: 388 DI-RYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS- 445
+ Y+V L EN PL T + + TD D NG V +P R+R +FS
Sbjct: 244 EAPSYLVE-------LPENAPLGTVVIDLNATDADEGPNGEVLYSFSSYVPDRVRELFSI 296
Query: 446 --NQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFV 503
L+ LDYE I + A D G P+ + +K+ D NDNAP FV
Sbjct: 297 DPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAPSI--GFV 354
Query: 504 TV---SIPENNSPGIQLMKVSATDADSGPNAEINY-------------LLGPDAPPEFSL 547
+V ++ E PG + V TD DSG N ++ L GP F L
Sbjct: 355 SVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGGGLGGPGGSVPFKL 414
Query: 548 DRR-TGMLTVV--KKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH 604
+ TVV + LDRE +D+Y TI+A+D G PPL S + + I+D+NDN P FT
Sbjct: 415 EENYDNFYTVVTDRPLDRETQDEYNVTIVARDGGSPPLNSTKSFAIKILDENDNPPRFTK 474
Query: 605 NEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDD-------FTIDSQTGVI 657
Y V EN +G + DPD G N V+ SIL + +++ G I
Sbjct: 475 GLYVLQVHENNIPGEYLGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAI 534
Query: 658 RPNISFDREKQESYTFYVKAEDGGRVSR-SSSAKVTINVVDVNDNKPVFIVPPY-NYSYE 715
SF+ E+ +++ F V A+D G + S+A V + V+DVNDN PV ++P N + E
Sbjct: 535 YALRSFNFEQTKAFEFKVLAKDSGAPAHLESNATVRVTVLDVNDNAPVIVLPTLQNDTAE 594
Query: 716 LVLP-STNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKC--D 772
L +P + G +V V A+D+D G + + Y IV GN LF ID +G I + D
Sbjct: 595 LQVPRNAGLGYLVSTVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSGEIRTLHPFWED 654
Query: 773 VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEI 832
VT + ++VK D G+P + + +L+ +S+ +
Sbjct: 655 VTP--VVELVVKVTDHGKP------------------TLSAVAKLIIRSVSGSLPEGVPR 694
Query: 833 ADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPE 892
+ D L+ ++ +++ IT V+C++ + + N + +E++ P
Sbjct: 695 VNGEQHHWDMSLPLIVTLSTISIILLAAMITIAVKCKR-ENKEIRTYNCRIAEYSHPQ-- 751
Query: 893 NRQMIMMKKKKKKKKHSPKNLLLNVVTIEETKADDV 928
+ K KKKK + +++L +EE A +V
Sbjct: 752 -----LGGGKGKKKKINKNDIMLVQSEVEERNAMNV 782
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 352 bits (904), Expect = 8e-97
Identities = 219/676 (32%), Positives = 352/676 (52%), Gaps = 50/676 (7%)
Query: 45 LLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDV 104
+L+ ++ +G + Y++ EE+ + +G++ +DL L P + ++ + G
Sbjct: 18 ILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLE--PRELAERGVR---IIPRGRT 72
Query: 105 PLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDI 164
L + +G + T G RIDRE+LC G + ++ + IL ++ ++ + + DI
Sbjct: 73 QLFALNPRSGSLVTAG-RIDREELCMGAIK-----CQLNLDILMEDKVKIYGVEVEVRDI 126
Query: 165 NDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIET 224
NDNAP F + + I I EN+A ++ LP A DPD+G N +Q+YEL + + F L V
Sbjct: 127 NDNAPYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTH-FSLIVQNG 185
Query: 225 PEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKET 284
+G K P+L++++ LDREEK + + + DGG P R+ TA ++V V D NDN P F +
Sbjct: 186 ADGSKYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQP 245
Query: 285 EIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIK 344
E S+PEN +GT + ++ATD D G NA++ +SF V + A ++F L+ +G I+
Sbjct: 246 EYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSF-RYVDDKAAQVFKLDCNSGTISTI 304
Query: 345 EPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSE 404
LD EE+ +++ V A D ARA VL+ V DVNDN P + + + + V E
Sbjct: 305 GELDHEESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSV------PE 358
Query: 405 NIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEY 464
N P T IAL+ V D+D++ NG+V CF +PF+L + N + L LD E Y
Sbjct: 359 NSPRGTLIALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSY 418
Query: 465 AIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATD 524
I + A D G PPL+ + + V D NDN PVF Q+ + IPENN G+ L+ V+A D
Sbjct: 419 NITVTATDRGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHD 478
Query: 525 ADSGPNAEINYLL------GPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNG 578
D NA+I Y L G S++ TG+L + D E+ ++A+DNG
Sbjct: 479 PDCEENAQITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNG 538
Query: 579 VPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGL--------------- 623
PPL+SNV++ + ++DQNDN+P + LP G+ G+
Sbjct: 539 HPPLSSNVSLSLFVLDQNDNAPEILY--------PALPTDGSTGVELAPRSAEPGYLVTK 590
Query: 624 ITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
+ D D G N+ ++ +L ++ F++ TG +R + + V +D G
Sbjct: 591 VVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHG 650
Query: 682 RVSRSSSAKVTINVVD 697
+ S++ +T+ V D
Sbjct: 651 QPPLSATVTLTVAVAD 666
Score = 247 bits (631), Expect = 4e-65
Identities = 196/659 (29%), Positives = 311/659 (47%), Gaps = 49/659 (7%)
Query: 233 LIVQKELDREEKDTYVMKVKVE-DGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIP 291
L+ +DREE +K ++ D + ++V V D NDN P F+E+E+E+ I
Sbjct: 84 LVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYFRESELEIKIS 143
Query: 292 ENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGL----ITIKEPL 347
ENA HA D DIG+N+ + S N L N G + +K L
Sbjct: 144 ENAATEMRFPLPHAWDPDIGKNSLQSYELS---PNTHFSLIVQNGADGSKYPELVLKRAL 200
Query: 348 DREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSEN 405
DREE H L++ ASDGG + A + V V D NDN P+ P V EN
Sbjct: 201 DREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAF-----AQPEYRASV-PEN 254
Query: 406 IPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS---NQFLLENAAYLDYESTK 462
+ L T++ ++ TD D N V ++ + + VF N + LD+E +
Sbjct: 255 LALGTQLLVVNATDPDEGVNAEVR-YSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 463 EYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSA 522
Y +++ A D + A + I V D NDNAP + + S+PEN+ G + ++
Sbjct: 314 FYQMEVQAMD--NAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNV 371
Query: 523 TDADSGPNAEINYLLGPDAPPEFSLDRRTG---MLTVVKKLDREKEDKYLFTILAKDNGV 579
D DS N ++ + + P F L++ G L LDRE+ Y T+ A D G
Sbjct: 372 NDQDSEENGQVICFIQGNLP--FKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGT 429
Query: 580 PPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTL 639
PPL++ + +++ D NDN PVF Y Y+PEN PR ++ +T DPD +N+ +T
Sbjct: 430 PPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITY 489
Query: 640 SILDE-------NDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVT 692
S+ + + +I+S TGV+ SFD E+ V A D G SS+ ++
Sbjct: 490 SLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLS 549
Query: 693 INVVDVNDNKPVFIVPPY----NYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIV 748
+ V+D NDN P + P + EL S PG +V +V+AVD D+G NA + Y ++
Sbjct: 550 LFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL 609
Query: 749 GGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESV 808
+ LF++ TG + D ++V D GQP L + V + + V +S+
Sbjct: 610 KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQP-PLSATVTLTVAVADSI 668
Query: 809 TNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVR 867
++ +L S+E+P N+E +D++ Y+ + VAAV+ V++ + +R
Sbjct: 669 PQ--VLADL--GSLESPA--NSETSDLTL----YLVVAVAAVSCVFLAFVILLLALRLR 717
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 352 bits (904), Expect = 8e-97
Identities = 219/676 (32%), Positives = 352/676 (52%), Gaps = 50/676 (7%)
Query: 45 LLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDV 104
+L+ ++ +G + Y++ EE+ + +G++ +DL L P + ++ + G
Sbjct: 18 ILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLE--PRELAERGVR---IIPRGRT 72
Query: 105 PLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDI 164
L + +G + T G RIDRE+LC G + ++ + IL ++ ++ + + DI
Sbjct: 73 QLFALNPRSGSLVTAG-RIDREELCMGAIK-----CQLNLDILMEDKVKIYGVEVEVRDI 126
Query: 165 NDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIET 224
NDNAP F + + I I EN+A ++ LP A DPD+G N +Q+YEL + + F L V
Sbjct: 127 NDNAPYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTH-FSLIVQNG 185
Query: 225 PEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKET 284
+G K P+L++++ LDREEK + + + DGG P R+ TA ++V V D NDN P F +
Sbjct: 186 ADGSKYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQP 245
Query: 285 EIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIK 344
E S+PEN +GT + ++ATD D G NA++ +SF V + A ++F L+ +G I+
Sbjct: 246 EYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSF-RYVDDKAAQVFKLDCNSGTISTI 304
Query: 345 EPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSE 404
LD EE+ +++ V A D ARA VL+ V DVNDN P + + + + V E
Sbjct: 305 GELDHEESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSV------PE 358
Query: 405 NIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEY 464
N P T IAL+ V D+D++ NG+V CF +PF+L + N + L LD E Y
Sbjct: 359 NSPRGTLIALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSY 418
Query: 465 AIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATD 524
I + A D G PPL+ + + V D NDN PVF Q+ + IPENN G+ L+ V+A D
Sbjct: 419 NITVTATDRGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHD 478
Query: 525 ADSGPNAEINYLL------GPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNG 578
D NA+I Y L G S++ TG+L + D E+ ++A+DNG
Sbjct: 479 PDCEENAQITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNG 538
Query: 579 VPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGL--------------- 623
PPL+SNV++ + ++DQNDN+P + LP G+ G+
Sbjct: 539 HPPLSSNVSLSLFVLDQNDNAPEILY--------PALPTDGSTGVELAPRSAEPGYLVTK 590
Query: 624 ITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
+ D D G N+ ++ +L ++ F++ TG +R + + V +D G
Sbjct: 591 VVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHG 650
Query: 682 RVSRSSSAKVTINVVD 697
+ S++ +T+ V D
Sbjct: 651 QPPLSATVTLTVAVAD 666
Score = 247 bits (631), Expect = 4e-65
Identities = 196/659 (29%), Positives = 311/659 (47%), Gaps = 49/659 (7%)
Query: 233 LIVQKELDREEKDTYVMKVKVE-DGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIP 291
L+ +DREE +K ++ D + ++V V D NDN P F+E+E+E+ I
Sbjct: 84 LVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYFRESELEIKIS 143
Query: 292 ENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGL----ITIKEPL 347
ENA HA D DIG+N+ + S N L N G + +K L
Sbjct: 144 ENAATEMRFPLPHAWDPDIGKNSLQSYELS---PNTHFSLIVQNGADGSKYPELVLKRAL 200
Query: 348 DREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSEN 405
DREE H L++ ASDGG + A + V V D NDN P+ P V EN
Sbjct: 201 DREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAF-----AQPEYRASV-PEN 254
Query: 406 IPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS---NQFLLENAAYLDYESTK 462
+ L T++ ++ TD D N V ++ + + VF N + LD+E +
Sbjct: 255 LALGTQLLVVNATDPDEGVNAEVR-YSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 463 EYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSA 522
Y +++ A D + A + I V D NDNAP + + S+PEN+ G + ++
Sbjct: 314 FYQMEVQAMD--NAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNV 371
Query: 523 TDADSGPNAEINYLLGPDAPPEFSLDRRTG---MLTVVKKLDREKEDKYLFTILAKDNGV 579
D DS N ++ + + P F L++ G L LDRE+ Y T+ A D G
Sbjct: 372 NDQDSEENGQVICFIQGNLP--FKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGT 429
Query: 580 PPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTL 639
PPL++ + +++ D NDN PVF Y Y+PEN PR ++ +T DPD +N+ +T
Sbjct: 430 PPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITY 489
Query: 640 SILDE-------NDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVT 692
S+ + + +I+S TGV+ SFD E+ V A D G SS+ ++
Sbjct: 490 SLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLS 549
Query: 693 INVVDVNDNKPVFIVPPY----NYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIV 748
+ V+D NDN P + P + EL S PG +V +V+AVD D+G NA + Y ++
Sbjct: 550 LFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL 609
Query: 749 GGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESV 808
+ LF++ TG + D ++V D GQP L + V + + V +S+
Sbjct: 610 KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQP-PLSATVTLTVAVADSI 668
Query: 809 TNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVR 867
++ +L S+E+P N+E +D++ Y+ + VAAV+ V++ + +R
Sbjct: 669 PQ--VLADL--GSLESPA--NSETSDLTL----YLVVAVAAVSCVFLAFVILLLALRLR 717
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 349 bits (895), Expect = 9e-96
Identities = 231/664 (34%), Positives = 346/664 (52%), Gaps = 50/664 (7%)
Query: 55 AQEKNYTIREEIPENVLIGNLLKDLNLSL--IPNKSLTTTMQFKLVYKTGDVPLIRIEED 112
+Q+ YTI EE+ +G L KDL LS+ +P + L + + + +
Sbjct: 28 SQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE----------DYFNVSLE 77
Query: 113 TGEIFTTGARIDREKLCAGIPRDEHCFYEVE-VAILPDEIFRLVKIRFLIEDINDNAPLF 171
+G++ G RIDREK+C R C E E VA P +F +V + I+DINDNAP F
Sbjct: 78 SGDLLVNG-RIDREKICG---RKLECALEFETVAENPMNVFHVVVV---IQDINDNAPRF 130
Query: 172 PATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMP 231
A I++ I E++ K++L +A D DV N ++ Y + +Q F L E+P+G K P
Sbjct: 131 VAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQ-YFSLSTKESPDGSKYP 189
Query: 232 QLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIP 291
L+++K LDRE + ++ + + DGG P S T + + VTD NDN PVF + VS+
Sbjct: 190 VLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQ 249
Query: 292 ENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREE 351
EN P GTSV ++ ATD D G NA+I ++F N S I+ LF+LN TG IT LD EE
Sbjct: 250 ENVPWGTSVLRVMATDQDEGINAEITYAFLN--SPISTSLFNLNPNTGDITTNGTLDFEE 307
Query: 352 TPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTK 411
T + L V A DGG+ A V + + D NDN P + N + E+ L T
Sbjct: 308 TSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQI------PEDSDLGTV 361
Query: 412 IALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAA 471
IALI V DKD+ NG VTC+T E+PF+L N + L A L+ E T +Y + ++A
Sbjct: 362 IALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIAT 421
Query: 472 DAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNA 531
D GKP L+ + + + D NDNAPVF Q+ V + ENN PG + +VSA+D D GPN
Sbjct: 422 DKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNG 481
Query: 532 EINY-LLGPDAPPE-----FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSN 585
++Y +L D P S+ ++G++ + D E+ + T+ A+D G P L++N
Sbjct: 482 RVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSAN 541
Query: 586 VTVFVSIIDQNDNSPVFTHNEYKFYVPEN------LPRHGTVGL----ITVTDPDYGDNS 635
V++ V + D NDN+P Y P+ +PR G + D D G N+
Sbjct: 542 VSLRVLVGDLNDNAPRVL---YPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
Query: 636 AVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTI 693
++ +L ++ F++ +TG +R + V DGG+ S++A + +
Sbjct: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
Query: 694 NVVD 697
D
Sbjct: 659 IFAD 662
Score = 234 bits (596), Expect = 4e-61
Identities = 188/709 (26%), Positives = 328/709 (46%), Gaps = 53/709 (7%)
Query: 176 INISIPENSAINSKYTLPAAVDPDVGINGVQNYEL-IKSQNIFGLDVIETPEGDKMPQLI 234
I +IPE A S+ A D + + + +L + +++ F + + GD L+
Sbjct: 31 IRYTIPEELANGSRVG-KLAKDLGLSVRELPTRKLRVSAEDYFNVSL---ESGD----LL 82
Query: 235 VQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPEN 293
V +DRE+ ++ +E + + V + D NDN P F I++ I E+
Sbjct: 83 VNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEICES 142
Query: 294 APVGTSVTQLHATDADI-GENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREET 352
A G + A DAD+ G + K++ N +++ + + ++ +++PLDRE
Sbjct: 143 ALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQ 202
Query: 353 PNHKLLVLASDGGLMPARAM--VLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNT 410
+H+L++ A DGG P + + VTD NDN P + + V L EN+P T
Sbjct: 203 SSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAP------VFSQEVYRVSLQENVPWGT 256
Query: 411 KIALITVTDKDADHNGRVT-CFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLL 469
+ + TD+D N +T F + I L + N + LD+E T Y + +
Sbjct: 257 SVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVE 316
Query: 470 AADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGP 529
A D G + + I++ DENDNAP T + IPE++ G + + D DSG
Sbjct: 317 AKDGGVHTAHCNVQ--IEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQ 374
Query: 530 NAEINYLLGPDAPPEF-SLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTV 588
N + + P + S + L + L+RE+ Y TI+A D G P L+S ++
Sbjct: 375 NGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSI 434
Query: 589 FVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDD- 647
+ I D NDN+PVF Y +V EN P ++ ++ +DPD G N V+ SIL + +
Sbjct: 435 TLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEP 494
Query: 648 ------FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDN 701
++ Q+GV+ +FD E+ ++ ++A D G + S++ + + V D+NDN
Sbjct: 495 RELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDN 554
Query: 702 KPVFIVPPYNYS----YELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFA 757
P + P +++V + PG +V +V+AVD D+G NA + Y ++ + LF+
Sbjct: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614
Query: 758 IDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINEL 817
+ TG + D R+LV D GQP + + +F +
Sbjct: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFAD------------ 662
Query: 818 VRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVV 866
S++ + ++ + S P ++ LV A+A ++ V+F+ AV+
Sbjct: 663 ---SLQEVLPDLSDRPEPSDPQTELQFYLVVALA----LISVLFLLAVI 704
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 349 bits (895), Expect = 9e-96
Identities = 231/664 (34%), Positives = 346/664 (52%), Gaps = 50/664 (7%)
Query: 55 AQEKNYTIREEIPENVLIGNLLKDLNLSL--IPNKSLTTTMQFKLVYKTGDVPLIRIEED 112
+Q+ YTI EE+ +G L KDL LS+ +P + L + + + +
Sbjct: 28 SQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE----------DYFNVSLE 77
Query: 113 TGEIFTTGARIDREKLCAGIPRDEHCFYEVE-VAILPDEIFRLVKIRFLIEDINDNAPLF 171
+G++ G RIDREK+C R C E E VA P +F +V + I+DINDNAP F
Sbjct: 78 SGDLLVNG-RIDREKICG---RKLECALEFETVAENPMNVFHVVVV---IQDINDNAPRF 130
Query: 172 PATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMP 231
A I++ I E++ K++L +A D DV N ++ Y + +Q F L E+P+G K P
Sbjct: 131 VAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQ-YFSLSTKESPDGSKYP 189
Query: 232 QLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIP 291
L+++K LDRE + ++ + + DGG P S T + + VTD NDN PVF + VS+
Sbjct: 190 VLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQ 249
Query: 292 ENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREE 351
EN P GTSV ++ ATD D G NA+I ++F N S I+ LF+LN TG IT LD EE
Sbjct: 250 ENVPWGTSVLRVMATDQDEGINAEITYAFLN--SPISTSLFNLNPNTGDITTNGTLDFEE 307
Query: 352 TPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTK 411
T + L V A DGG+ A V + + D NDN P + N + E+ L T
Sbjct: 308 TSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQI------PEDSDLGTV 361
Query: 412 IALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAA 471
IALI V DKD+ NG VTC+T E+PF+L N + L A L+ E T +Y + ++A
Sbjct: 362 IALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIAT 421
Query: 472 DAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNA 531
D GKP L+ + + + D NDNAPVF Q+ V + ENN PG + +VSA+D D GPN
Sbjct: 422 DKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNG 481
Query: 532 EINY-LLGPDAPPE-----FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSN 585
++Y +L D P S+ ++G++ + D E+ + T+ A+D G P L++N
Sbjct: 482 RVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSAN 541
Query: 586 VTVFVSIIDQNDNSPVFTHNEYKFYVPEN------LPRHGTVGL----ITVTDPDYGDNS 635
V++ V + D NDN+P Y P+ +PR G + D D G N+
Sbjct: 542 VSLRVLVGDLNDNAPRVL---YPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
Query: 636 AVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTI 693
++ +L ++ F++ +TG +R + V DGG+ S++A + +
Sbjct: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
Query: 694 NVVD 697
D
Sbjct: 659 IFAD 662
Score = 234 bits (596), Expect = 4e-61
Identities = 188/709 (26%), Positives = 328/709 (46%), Gaps = 53/709 (7%)
Query: 176 INISIPENSAINSKYTLPAAVDPDVGINGVQNYEL-IKSQNIFGLDVIETPEGDKMPQLI 234
I +IPE A S+ A D + + + +L + +++ F + + GD L+
Sbjct: 31 IRYTIPEELANGSRVG-KLAKDLGLSVRELPTRKLRVSAEDYFNVSL---ESGD----LL 82
Query: 235 VQKELDREEKDTYVMKVKVEDGGFPQRSSTAI-LQVSVTDTNDNHPVFKETEIEVSIPEN 293
V +DRE+ ++ +E + + V + D NDN P F I++ I E+
Sbjct: 83 VNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEICES 142
Query: 294 APVGTSVTQLHATDADI-GENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREET 352
A G + A DAD+ G + K++ N +++ + + ++ +++PLDRE
Sbjct: 143 ALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQ 202
Query: 353 PNHKLLVLASDGGLMPARAM--VLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNT 410
+H+L++ A DGG P + + VTD NDN P + + V L EN+P T
Sbjct: 203 SSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAP------VFSQEVYRVSLQENVPWGT 256
Query: 411 KIALITVTDKDADHNGRVT-CFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLL 469
+ + TD+D N +T F + I L + N + LD+E T Y + +
Sbjct: 257 SVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVE 316
Query: 470 AADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGP 529
A D G + + I++ DENDNAP T + IPE++ G + + D DSG
Sbjct: 317 AKDGGVHTAHCNVQ--IEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQ 374
Query: 530 NAEINYLLGPDAPPEF-SLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTV 588
N + + P + S + L + L+RE+ Y TI+A D G P L+S ++
Sbjct: 375 NGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSI 434
Query: 589 FVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDD- 647
+ I D NDN+PVF Y +V EN P ++ ++ +DPD G N V+ SIL + +
Sbjct: 435 TLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEP 494
Query: 648 ------FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDN 701
++ Q+GV+ +FD E+ ++ ++A D G + S++ + + V D+NDN
Sbjct: 495 RELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDN 554
Query: 702 KPVFIVPPYNYS----YELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFA 757
P + P +++V + PG +V +V+AVD D+G NA + Y ++ + LF+
Sbjct: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614
Query: 758 IDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINEL 817
+ TG + D R+LV D GQP + + +F +
Sbjct: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFAD------------ 662
Query: 818 VRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVV 866
S++ + ++ + S P ++ LV A+A ++ V+F+ AV+
Sbjct: 663 ---SLQEVLPDLSDRPEPSDPQTELQFYLVVALA----LISVLFLLAVI 704
>gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens]
Length = 1040
Score = 348 bits (892), Expect = 2e-95
Identities = 226/678 (33%), Positives = 352/678 (51%), Gaps = 57/678 (8%)
Query: 59 NYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFT 118
+YT++EE +GN+ +DL L + + + F+ V P + + +TG ++
Sbjct: 21 HYTVQEEQEHGTFVGNIAEDLGLDI----TKLSARGFQTV-PNSRTPYLDLNLETGVLYV 75
Query: 119 TGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINI 178
+IDRE++C P C +EV + + L ++ + DINDN P FP + +
Sbjct: 76 N-EKIDREQICKQSPS---CVLHLEVFL--ENPLELFQVEIEVLDINDNPPSFPEPDLTV 129
Query: 179 SIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKE 238
I E++ +++ L +A DPDVG N +++YE I + F LDV +G++ +L+++K
Sbjct: 130 EISESATPGTRFPLESAFDPDVGTNSLRDYE-ITPNSYFSLDVQTQGDGNRFAELVLEKP 188
Query: 239 LDREEKDTYVMKVKVEDGGF-------------------PQRSSTAILQVSVTDTNDNHP 279
LDRE++ + + DGG QR+ TA+L + V D+NDN P
Sbjct: 189 LDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTALLTIRVLDSNDNVP 248
Query: 280 VFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTG 339
F + VS+PEN+P GT V QL+ATD D G+N ++ +SFS+ +S AR LF L+ TG
Sbjct: 249 AFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISPRARELFGLSPRTG 308
Query: 340 LITIKEPLDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVN 397
+ + LD EE+P +++ V A D G +PA VLV V D NDN P I + V
Sbjct: 309 RLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNAPEISFSTVKEAV- 367
Query: 398 DTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLD 457
SE T +AL +VTD+D++ NG+V C ++PFRL+ F N + + A LD
Sbjct: 368 -----SEGAAPGTVVALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAPLD 422
Query: 458 YESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQL 517
E+ Y + ++A D G+P L+ S + ++V D NDNAP F+Q V + ENN PG +
Sbjct: 423 REAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYI 482
Query: 518 MKVSATDADSGPNAEINY------LLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFT 571
VSATD D G NA++ Y + G S++ G L ++ D E+ + F
Sbjct: 483 YAVSATDRDEGANAQLAYSILECQIQGMSVFTYVSINSENGYLYALRSFDYEQLKDFSFQ 542
Query: 572 ILAKDNGVP-PLTSNVTVFVSIIDQNDNSPVFT---HNEYKFYVPENLPRHGTVGL---- 623
+ A+D G P L N TV + I+DQNDN+P E LPR G
Sbjct: 543 VEARDAGSPQALAGNATVNILIVDQNDNAPAIVAPLPGRNGTPAREVLPRSAEPGYLLTR 602
Query: 624 ITVTDPDYGDNSAVTLSIL--DENDDFTIDSQTGVIRP--NISFDREKQESYTFYVKAED 679
+ D D G+N+ +T SI+ +E + F +D +TG +R + R+ Q Y ++ D
Sbjct: 603 VAAVDADDGENARLTYSIVRGNEMNLFRMDWRTGELRTARRVPAKRDPQRPYELVIEVRD 662
Query: 680 GGRVSRSSSAKVTINVVD 697
G+ SS+A + + +VD
Sbjct: 663 HGQPPLSSTATLVVQLVD 680
Score = 233 bits (593), Expect = 9e-61
Identities = 178/588 (30%), Positives = 272/588 (46%), Gaps = 58/588 (9%)
Query: 267 LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSN 326
+++ V D NDN P F E ++ V I E+A GT A D D+G N+ + +
Sbjct: 108 VEIEVLDINDNPPSFPEPDLTVEISESATPGTRFPLESAFDPDVGTNSLRDYEIT----- 162
Query: 327 IARRLFHLNATT-------GLITIKEPLDREETPNHKLLVLASDGG-------------- 365
F L+ T + +++PLDRE+ H+ ++ A DGG
Sbjct: 163 -PNSYFSLDVQTQGDGNRFAELVLEKPLDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGG 221
Query: 366 --LMPAR-----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVT 418
L P + A++ + V D NDNVP+ D PV TV L EN P T + + T
Sbjct: 222 AGLPPQQQRTGTALLTIRVLDSNDNVPAFD-----QPVY-TVSLPENSPPGTLVIQLNAT 275
Query: 419 DKDADHNGRVTCFTDHEIPFRLRPVFS---NQFLLENAAYLDYESTKEYAIKLLAADAGK 475
D D NG V I R R +F LE + LDYE + Y + + A D G
Sbjct: 276 DPDEGQNGEVVYSFSSHISPRARELFGLSPRTGRLEVSGELDYEESPVYQVYVQAKDLGP 335
Query: 476 PPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINY 535
+ + ++V D NDNAP + S V ++ E +PG + S TD DS N ++
Sbjct: 336 NAVPAHCKVLVRVLDANDNAPEISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQC 395
Query: 536 LLGPDAPPEFSLDRRTGMLTVVKK-LDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIID 594
L D P + V + LDRE D Y T++A+D G P L+++ ++ V + D
Sbjct: 396 ELLGDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSD 455
Query: 595 QNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDD------- 647
NDN+P F+ Y YV EN + ++ TD D G N+ + SIL+
Sbjct: 456 VNDNAPRFSQPVYDVYVTENNVPGAYIYAVSATDRDEGANAQLAYSILECQIQGMSVFTY 515
Query: 648 FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSR-SSSAKVTINVVDVNDNKPVFI 706
+I+S+ G + SFD E+ + ++F V+A D G + +A V I +VD NDN P +
Sbjct: 516 VSINSENGYLYALRSFDYEQLKDFSFQVEARDAGSPQALAGNATVNILIVDQNDNAPAIV 575
Query: 707 VPPYNYS----YELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQET 762
P + E++ S PG ++ +V AVD D G NA + YSIV GN +LF +D T
Sbjct: 576 APLPGRNGTPAREVLPRSAEPGYLLTRVAAVDADDGENARLTYSIVRGNEMNLFRMDWRT 635
Query: 763 GNITLMEKCDV--TDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESV 808
G + + + ++++ D GQP + +V V+ +V
Sbjct: 636 GELRTARRVPAKRDPQRPYELVIEVRDHGQPPLSSTATLVVQLVDGAV 683
Score = 190 bits (482), Expect = 7e-48
Identities = 178/583 (30%), Positives = 256/583 (43%), Gaps = 78/583 (13%)
Query: 284 TEIEVSIPENAPVGTSVTQLHATDADIG-ENAKIHFSFSNLVSNIARRLFHLNATTGLIT 342
+++ ++ E GT V + D+G + K+ V N LN TG++
Sbjct: 18 SQLHYTVQEEQEHGTFVGNIAE---DLGLDITKLSARGFQTVPNSRTPYLDLNLETGVLY 74
Query: 343 IKEPLDREE----TPN---HKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNP 395
+ E +DRE+ +P+ H + L + L V + V D+NDN PS P
Sbjct: 75 VNEKIDREQICKQSPSCVLHLEVFLENPLELF----QVEIEVLDINDNPPSF-------P 123
Query: 396 VND-TVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS--------- 445
D TV +SE+ T+ L + D D N D+EI FS
Sbjct: 124 EPDLTVEISESATPGTRFPLESAFDPDVGTNS----LRDYEIT--PNSYFSLDVQTQGDG 177
Query: 446 NQF---LLENAAYLDYESTKEYAIKLLAAD----------------AGKPPLNQ---SAM 483
N+F +LE LD E + L A D AG PP Q +A+
Sbjct: 178 NRFAELVLEKP--LDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTAL 235
Query: 484 LFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYL----LGP 539
L I+V D NDN P F Q TVS+PEN+ PG +++++ATD D G N E+ Y + P
Sbjct: 236 LTIRVLDSNDNVPAFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISP 295
Query: 540 DAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNS 599
A F L RTG L V +LD E+ Y + AKD G + ++ V V ++D NDN+
Sbjct: 296 RARELFGLSPRTGRLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNA 355
Query: 600 PVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTG---V 656
P + + K V E V L +VTD D +N V +L + F + S
Sbjct: 356 PEISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQCELLGDVP-FRLKSSFKNYYT 414
Query: 657 IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYEL 716
I DRE +SYT V A D G + S+S + + V DVNDN P F P Y+
Sbjct: 415 IVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDV---Y 471
Query: 717 VLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIV-----GGNTRDLFAIDQETGNITLMEKC 771
V + PG ++ V A D D G NA++ YSI+ G + +I+ E G + +
Sbjct: 472 VTENNVPGAYIYAVSATDRDEGANAQLAYSILECQIQGMSVFTYVSINSENGYLYALRSF 531
Query: 772 DVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 814
D L V+A D G P +L VN+ + + NA I
Sbjct: 532 DYEQLKDFSFQVEARDAGSPQALAGNATVNILIVDQNDNAPAI 574
>gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens]
Length = 896
Score = 348 bits (892), Expect = 2e-95
Identities = 226/678 (33%), Positives = 352/678 (51%), Gaps = 57/678 (8%)
Query: 59 NYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFT 118
+YT++EE +GN+ +DL L + + + F+ V P + + +TG ++
Sbjct: 21 HYTVQEEQEHGTFVGNIAEDLGLDI----TKLSARGFQTV-PNSRTPYLDLNLETGVLYV 75
Query: 119 TGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINI 178
+IDRE++C P C +EV + + L ++ + DINDN P FP + +
Sbjct: 76 N-EKIDREQICKQSPS---CVLHLEVFL--ENPLELFQVEIEVLDINDNPPSFPEPDLTV 129
Query: 179 SIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKE 238
I E++ +++ L +A DPDVG N +++YE I + F LDV +G++ +L+++K
Sbjct: 130 EISESATPGTRFPLESAFDPDVGTNSLRDYE-ITPNSYFSLDVQTQGDGNRFAELVLEKP 188
Query: 239 LDREEKDTYVMKVKVEDGGF-------------------PQRSSTAILQVSVTDTNDNHP 279
LDRE++ + + DGG QR+ TA+L + V D+NDN P
Sbjct: 189 LDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTALLTIRVLDSNDNVP 248
Query: 280 VFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTG 339
F + VS+PEN+P GT V QL+ATD D G+N ++ +SFS+ +S AR LF L+ TG
Sbjct: 249 AFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISPRARELFGLSPRTG 308
Query: 340 LITIKEPLDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVNPVN 397
+ + LD EE+P +++ V A D G +PA VLV V D NDN P I + V
Sbjct: 309 RLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNAPEISFSTVKEAV- 367
Query: 398 DTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLD 457
SE T +AL +VTD+D++ NG+V C ++PFRL+ F N + + A LD
Sbjct: 368 -----SEGAAPGTVVALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAPLD 422
Query: 458 YESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQL 517
E+ Y + ++A D G+P L+ S + ++V D NDNAP F+Q V + ENN PG +
Sbjct: 423 REAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYI 482
Query: 518 MKVSATDADSGPNAEINY------LLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFT 571
VSATD D G NA++ Y + G S++ G L ++ D E+ + F
Sbjct: 483 YAVSATDRDEGANAQLAYSILECQIQGMSVFTYVSINSENGYLYALRSFDYEQLKDFSFQ 542
Query: 572 ILAKDNGVP-PLTSNVTVFVSIIDQNDNSPVFT---HNEYKFYVPENLPRHGTVGL---- 623
+ A+D G P L N TV + I+DQNDN+P E LPR G
Sbjct: 543 VEARDAGSPQALAGNATVNILIVDQNDNAPAIVAPLPGRNGTPAREVLPRSAEPGYLLTR 602
Query: 624 ITVTDPDYGDNSAVTLSIL--DENDDFTIDSQTGVIRP--NISFDREKQESYTFYVKAED 679
+ D D G+N+ +T SI+ +E + F +D +TG +R + R+ Q Y ++ D
Sbjct: 603 VAAVDADDGENARLTYSIVRGNEMNLFRMDWRTGELRTARRVPAKRDPQRPYELVIEVRD 662
Query: 680 GGRVSRSSSAKVTINVVD 697
G+ SS+A + + +VD
Sbjct: 663 HGQPPLSSTATLVVQLVD 680
Score = 233 bits (593), Expect = 9e-61
Identities = 178/588 (30%), Positives = 272/588 (46%), Gaps = 58/588 (9%)
Query: 267 LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSN 326
+++ V D NDN P F E ++ V I E+A GT A D D+G N+ + +
Sbjct: 108 VEIEVLDINDNPPSFPEPDLTVEISESATPGTRFPLESAFDPDVGTNSLRDYEIT----- 162
Query: 327 IARRLFHLNATT-------GLITIKEPLDREETPNHKLLVLASDGG-------------- 365
F L+ T + +++PLDRE+ H+ ++ A DGG
Sbjct: 163 -PNSYFSLDVQTQGDGNRFAELVLEKPLDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGG 221
Query: 366 --LMPAR-----AMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVT 418
L P + A++ + V D NDNVP+ D PV TV L EN P T + + T
Sbjct: 222 AGLPPQQQRTGTALLTIRVLDSNDNVPAFD-----QPVY-TVSLPENSPPGTLVIQLNAT 275
Query: 419 DKDADHNGRVTCFTDHEIPFRLRPVFS---NQFLLENAAYLDYESTKEYAIKLLAADAGK 475
D D NG V I R R +F LE + LDYE + Y + + A D G
Sbjct: 276 DPDEGQNGEVVYSFSSHISPRARELFGLSPRTGRLEVSGELDYEESPVYQVYVQAKDLGP 335
Query: 476 PPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINY 535
+ + ++V D NDNAP + S V ++ E +PG + S TD DS N ++
Sbjct: 336 NAVPAHCKVLVRVLDANDNAPEISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQC 395
Query: 536 LLGPDAPPEFSLDRRTGMLTVVKK-LDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIID 594
L D P + V + LDRE D Y T++A+D G P L+++ ++ V + D
Sbjct: 396 ELLGDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSD 455
Query: 595 QNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDD------- 647
NDN+P F+ Y YV EN + ++ TD D G N+ + SIL+
Sbjct: 456 VNDNAPRFSQPVYDVYVTENNVPGAYIYAVSATDRDEGANAQLAYSILECQIQGMSVFTY 515
Query: 648 FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSR-SSSAKVTINVVDVNDNKPVFI 706
+I+S+ G + SFD E+ + ++F V+A D G + +A V I +VD NDN P +
Sbjct: 516 VSINSENGYLYALRSFDYEQLKDFSFQVEARDAGSPQALAGNATVNILIVDQNDNAPAIV 575
Query: 707 VPPYNYS----YELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQET 762
P + E++ S PG ++ +V AVD D G NA + YSIV GN +LF +D T
Sbjct: 576 APLPGRNGTPAREVLPRSAEPGYLLTRVAAVDADDGENARLTYSIVRGNEMNLFRMDWRT 635
Query: 763 GNITLMEKCDV--TDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESV 808
G + + + ++++ D GQP + +V V+ +V
Sbjct: 636 GELRTARRVPAKRDPQRPYELVIEVRDHGQPPLSSTATLVVQLVDGAV 683
Score = 190 bits (482), Expect = 7e-48
Identities = 178/583 (30%), Positives = 256/583 (43%), Gaps = 78/583 (13%)
Query: 284 TEIEVSIPENAPVGTSVTQLHATDADIG-ENAKIHFSFSNLVSNIARRLFHLNATTGLIT 342
+++ ++ E GT V + D+G + K+ V N LN TG++
Sbjct: 18 SQLHYTVQEEQEHGTFVGNIAE---DLGLDITKLSARGFQTVPNSRTPYLDLNLETGVLY 74
Query: 343 IKEPLDREE----TPN---HKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNP 395
+ E +DRE+ +P+ H + L + L V + V D+NDN PS P
Sbjct: 75 VNEKIDREQICKQSPSCVLHLEVFLENPLELF----QVEIEVLDINDNPPSF-------P 123
Query: 396 VND-TVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFS--------- 445
D TV +SE+ T+ L + D D N D+EI FS
Sbjct: 124 EPDLTVEISESATPGTRFPLESAFDPDVGTNS----LRDYEIT--PNSYFSLDVQTQGDG 177
Query: 446 NQF---LLENAAYLDYESTKEYAIKLLAAD----------------AGKPPLNQ---SAM 483
N+F +LE LD E + L A D AG PP Q +A+
Sbjct: 178 NRFAELVLEKP--LDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTAL 235
Query: 484 LFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYL----LGP 539
L I+V D NDN P F Q TVS+PEN+ PG +++++ATD D G N E+ Y + P
Sbjct: 236 LTIRVLDSNDNVPAFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISP 295
Query: 540 DAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNS 599
A F L RTG L V +LD E+ Y + AKD G + ++ V V ++D NDN+
Sbjct: 296 RARELFGLSPRTGRLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNA 355
Query: 600 PVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTG---V 656
P + + K V E V L +VTD D +N V +L + F + S
Sbjct: 356 PEISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQCELLGDVP-FRLKSSFKNYYT 414
Query: 657 IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYEL 716
I DRE +SYT V A D G + S+S + + V DVNDN P F P Y+
Sbjct: 415 IVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDV---Y 471
Query: 717 VLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIV-----GGNTRDLFAIDQETGNITLMEKC 771
V + PG ++ V A D D G NA++ YSI+ G + +I+ E G + +
Sbjct: 472 VTENNVPGAYIYAVSATDRDEGANAQLAYSILECQIQGMSVFTYVSINSENGYLYALRSF 531
Query: 772 DVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLI 814
D L V+A D G P +L VN+ + + NA I
Sbjct: 532 DYEQLKDFSFQVEARDAGSPQALAGNATVNILIVDQNDNAPAI 574
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 346 bits (888), Expect = 6e-95
Identities = 231/691 (33%), Positives = 352/691 (50%), Gaps = 62/691 (8%)
Query: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTT 119
Y++ EE + +G++ KDL L P + ++ + G L + + +G + T
Sbjct: 33 YSVSEETDKGSFVGDIAKDLGLE--PRELAERGVR---IISRGRTQLFALNQRSGSLVTA 87
Query: 120 GARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINIS 179
G RIDRE++CA R C V IL ++ L I I DINDN P F IN+
Sbjct: 88 G-RIDREEICAQSAR---CL--VNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVK 141
Query: 180 IPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKEL 239
I EN+A ++ L A DPDVG N +Q+Y+L +++ F L V + K P+L++++ L
Sbjct: 142 IMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRH-FSLAVQSGDDETKYPELVLERVL 200
Query: 240 DREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTS 299
DREE+ + + + DGG P RSSTA +QV+V D ND+ PVF + +V++PEN PVGT
Sbjct: 201 DREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTR 260
Query: 300 VTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLV 359
+ +HA D D G N ++ +SF + + + +FHLN+ TG I+ E LD EET +++ V
Sbjct: 261 LLTVHAIDLDEGVNGEVTYSFRKITPKLPK-MFHLNSLTGEISTLEGLDYEETAFYEMEV 319
Query: 360 LASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTD 419
A DG +A VL+ V DVNDN P + + + + + E+ PL T IAL + D
Sbjct: 320 QAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSI------PEDTPLGTVIALFYLQD 373
Query: 420 KDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLN 479
+D+ NG VTC +PF+L N + L LD E+ Y I L A D G PPL+
Sbjct: 374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
Query: 480 QSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGP 539
+ +F++V D NDN P F S +V I ENN G + V+A D DS NA+I Y L
Sbjct: 434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Query: 540 D----APPE--FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSII 593
D AP S++ TG+L ++ D E+ + + A D+G PPL+SN+++ + ++
Sbjct: 494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
Query: 594 DQNDNSPVFTHNEYKFYVPENLPRHGTVGL---------------ITVTDPDYGDNSAVT 638
DQNDN P + LP G+ G+ + D D G N+ ++
Sbjct: 554 DQNDNPPEILY--------PALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605
Query: 639 LSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVV 696
+L ++ F + TG +R + + V +D G+ S++ +T+ V
Sbjct: 606 YLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665
Query: 697 DVNDNKPVFIVP---------PYNYSYELVL 718
D+ P + PYNY L L
Sbjct: 666 ---DSIPEVLADLGSLEPSDGPYNYDLTLYL 693
Score = 246 bits (628), Expect = 8e-65
Identities = 184/567 (32%), Positives = 267/567 (47%), Gaps = 42/567 (7%)
Query: 267 LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSN 326
+ V + D NDN P F EI V I EN G A D D+G N+ + S
Sbjct: 119 IDVEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLS----- 173
Query: 327 IARRLFHLNATTGLITIKEP-------LDREETPNHKLLVLASDGGLMP--ARAMVLVNV 377
R F L +G K P LDREE H L++ ASDGG P + A + V V
Sbjct: 174 -PNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTV 232
Query: 378 TDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIP 437
DVND+ P + V + EN+P+ T++ + D D NG VT ++ +I
Sbjct: 233 VDVNDHTPVFSLPQY------QVTVPENVPVGTRLLTVHAIDLDEGVNGEVT-YSFRKIT 285
Query: 438 FRLRPVFSNQFL---LENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDN 494
+L +F L + LDYE T Y +++ A D P A + I V D NDN
Sbjct: 286 PKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDG--PGSLTKAKVLITVLDVNDN 343
Query: 495 APVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAP--PEFSLDRRTG 552
AP T + ++ SIPE+ G + D DSG N E+ + + P E S+D
Sbjct: 344 APEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYR 403
Query: 553 MLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVP 612
++T K LDRE Y T+ A D G PPL+ +F+ + D NDN P F H+ Y Y+
Sbjct: 404 LVTT-KNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIA 462
Query: 613 ENLPRHGTVGLITVTDPDYGDNSAVTLSILDE-------NDDFTIDSQTGVIRPNISFDR 665
EN PR ++ L+T D D DN+ +T S+ ++ + +I+S TGV+ SFD
Sbjct: 463 ENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDY 522
Query: 666 EKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPY----NYSYELVLPST 721
E+ V A D G SS+ +++ V+D NDN P + P + EL S
Sbjct: 523 EQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSA 582
Query: 722 NPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRV 781
PG +V +V+AVD D+G NA + Y ++ + LFA+ TG + D +
Sbjct: 583 EPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSL 642
Query: 782 LVKANDLGQPDSLFSVVIVNLFVNESV 808
+V D GQP L + V + + V +S+
Sbjct: 643 VVAVQDHGQP-PLSATVTLTVAVADSI 668
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 346 bits (888), Expect = 6e-95
Identities = 231/691 (33%), Positives = 352/691 (50%), Gaps = 62/691 (8%)
Query: 60 YTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTT 119
Y++ EE + +G++ KDL L P + ++ + G L + + +G + T
Sbjct: 33 YSVSEETDKGSFVGDIAKDLGLE--PRELAERGVR---IISRGRTQLFALNQRSGSLVTA 87
Query: 120 GARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINIS 179
G RIDRE++CA R C V IL ++ L I I DINDN P F IN+
Sbjct: 88 G-RIDREEICAQSAR---CL--VNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVK 141
Query: 180 IPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKEL 239
I EN+A ++ L A DPDVG N +Q+Y+L +++ F L V + K P+L++++ L
Sbjct: 142 IMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRH-FSLAVQSGDDETKYPELVLERVL 200
Query: 240 DREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTS 299
DREE+ + + + DGG P RSSTA +QV+V D ND+ PVF + +V++PEN PVGT
Sbjct: 201 DREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTR 260
Query: 300 VTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLV 359
+ +HA D D G N ++ +SF + + + +FHLN+ TG I+ E LD EET +++ V
Sbjct: 261 LLTVHAIDLDEGVNGEVTYSFRKITPKLPK-MFHLNSLTGEISTLEGLDYEETAFYEMEV 319
Query: 360 LASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTD 419
A DG +A VL+ V DVNDN P + + + + + E+ PL T IAL + D
Sbjct: 320 QAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSI------PEDTPLGTVIALFYLQD 373
Query: 420 KDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLN 479
+D+ NG VTC +PF+L N + L LD E+ Y I L A D G PPL+
Sbjct: 374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
Query: 480 QSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGP 539
+ +F++V D NDN P F S +V I ENN G + V+A D DS NA+I Y L
Sbjct: 434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Query: 540 D----APPE--FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSII 593
D AP S++ TG+L ++ D E+ + + A D+G PPL+SN+++ + ++
Sbjct: 494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
Query: 594 DQNDNSPVFTHNEYKFYVPENLPRHGTVGL---------------ITVTDPDYGDNSAVT 638
DQNDN P + LP G+ G+ + D D G N+ ++
Sbjct: 554 DQNDNPPEILY--------PALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605
Query: 639 LSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVV 696
+L ++ F + TG +R + + V +D G+ S++ +T+ V
Sbjct: 606 YLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665
Query: 697 DVNDNKPVFIVP---------PYNYSYELVL 718
D+ P + PYNY L L
Sbjct: 666 ---DSIPEVLADLGSLEPSDGPYNYDLTLYL 693
Score = 246 bits (628), Expect = 8e-65
Identities = 184/567 (32%), Positives = 267/567 (47%), Gaps = 42/567 (7%)
Query: 267 LQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSN 326
+ V + D NDN P F EI V I EN G A D D+G N+ + S
Sbjct: 119 IDVEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLS----- 173
Query: 327 IARRLFHLNATTGLITIKEP-------LDREETPNHKLLVLASDGGLMP--ARAMVLVNV 377
R F L +G K P LDREE H L++ ASDGG P + A + V V
Sbjct: 174 -PNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTV 232
Query: 378 TDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIP 437
DVND+ P + V + EN+P+ T++ + D D NG VT ++ +I
Sbjct: 233 VDVNDHTPVFSLPQY------QVTVPENVPVGTRLLTVHAIDLDEGVNGEVT-YSFRKIT 285
Query: 438 FRLRPVFSNQFL---LENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDN 494
+L +F L + LDYE T Y +++ A D P A + I V D NDN
Sbjct: 286 PKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDG--PGSLTKAKVLITVLDVNDN 343
Query: 495 APVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAP--PEFSLDRRTG 552
AP T + ++ SIPE+ G + D DSG N E+ + + P E S+D
Sbjct: 344 APEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYR 403
Query: 553 MLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVP 612
++T K LDRE Y T+ A D G PPL+ +F+ + D NDN P F H+ Y Y+
Sbjct: 404 LVTT-KNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIA 462
Query: 613 ENLPRHGTVGLITVTDPDYGDNSAVTLSILDE-------NDDFTIDSQTGVIRPNISFDR 665
EN PR ++ L+T D D DN+ +T S+ ++ + +I+S TGV+ SFD
Sbjct: 463 ENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDY 522
Query: 666 EKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPY----NYSYELVLPST 721
E+ V A D G SS+ +++ V+D NDN P + P + EL S
Sbjct: 523 EQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSA 582
Query: 722 NPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRV 781
PG +V +V+AVD D+G NA + Y ++ + LFA+ TG + D +
Sbjct: 583 EPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSL 642
Query: 782 LVKANDLGQPDSLFSVVIVNLFVNESV 808
+V D GQP L + V + + V +S+
Sbjct: 643 VVAVQDHGQP-PLSATVTLTVAVADSI 668
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 345 bits (885), Expect = 1e-94
Identities = 214/681 (31%), Positives = 351/681 (51%), Gaps = 54/681 (7%)
Query: 44 VLLVCVVFHS----GAQEKNYTIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVY 99
+LL+C+ + A++ Y++ EE + +GN+ KDL L P + ++ +
Sbjct: 14 LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLE--PRELAKRGVR---IV 68
Query: 100 KTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRF 159
G L + +G + T G RIDRE+LC + CF +E +L ++ ++ +
Sbjct: 69 SRGKTQLFAVNPRSGSLITAG-RIDREELCETV---SSCFLNME--LLVEDTLKIYGVEV 122
Query: 160 LIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGL 219
I DINDNAP F + I + E++ +++ LP A DPDVG+N +Q+Y+L N F L
Sbjct: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL-SPNNYFSL 181
Query: 220 DVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHP 279
+ +G K P+L+++ LDRE++ +++ + DGG P R ++V V D ND+ P
Sbjct: 182 QLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIP 241
Query: 280 VFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTG 339
+F ++ VS+PEN GT V ++ATD D G N ++ +SF N+ S A +F L++ TG
Sbjct: 242 MFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESK-ASEIFQLDSQTG 300
Query: 340 LITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDT 399
+ ++ LD E+ +++ + DGG + +L+ V DVNDN P I I +N +
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSI--- 357
Query: 400 VVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYE 459
EN P T IAL+ V D+D+ NG+V+CF + +PF+L + N + L + LD E
Sbjct: 358 ---LENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRE 414
Query: 460 STKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMK 519
+ Y I L A D G PPL+ +++ V D+NDN PVF S + IPENN G +
Sbjct: 415 LVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFS 474
Query: 520 VSATDADSGPNAEINYLLGPDA------PPEFSLDRRTGMLTVVKKLDREKEDKYLFTIL 573
V+A D DS NA + Y L D S++ TG+L ++ D E+ ++
Sbjct: 475 VTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVI 534
Query: 574 AKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGL---------- 623
A+D+G PPL+SNV++ + ++DQNDN+P + LP G+ G+
Sbjct: 535 ARDSGDPPLSSNVSLSLFVLDQNDNAPEILY--------PALPTDGSTGVELAPRSAEPG 586
Query: 624 -----ITVTDPDYGDNSAVTLSILDENDD--FTIDSQTGVIRPNISFDREKQESYTFYVK 676
+ D D G N+ ++ +L ++ F + TG +R + + V
Sbjct: 587 YLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVA 646
Query: 677 AEDGGRVSRSSSAKVTINVVD 697
+D G+ S++ +T+ V D
Sbjct: 647 VQDHGQPPLSATVTLTVAVAD 667
Score = 251 bits (642), Expect = 2e-66
Identities = 211/725 (29%), Positives = 334/725 (46%), Gaps = 71/725 (9%)
Query: 171 FPATVINISIPENSAINSKYTLPAAVDPDVGIN-------GVQNYELIKSQNIFGLDVIE 223
F A I S+PE + K + + D+G+ GV+ K+Q +F ++
Sbjct: 27 FRARQIRYSVPEET---EKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQ-LFAVN--- 79
Query: 224 TPEGDKMPQLIVQKELDREEKDTYV------MKVKVEDGGFPQRSSTAILQVSVTDTNDN 277
+ LI +DREE V M++ VED ++V + D NDN
Sbjct: 80 ----PRSGSLITAGRIDREELCETVSSCFLNMELLVED-----TLKIYGVEVEIIDINDN 130
Query: 278 HPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFS-NLVSNIARRLFHLNA 336
P F+E E+E+ + E+A G +A D D+G N+ + S N ++ R A
Sbjct: 131 APSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGA 190
Query: 337 TTGLITIKEPLDREETPNHKLLVLASDGG--LMPARAMVLVNVTDVNDNVPSIDIRYIVN 394
+ ++ LDRE+ H LL+ A DGG + + V V DVND++P
Sbjct: 191 KNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVY-- 248
Query: 395 PVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVF---SNQFLLE 451
V + ENI T++ ++ TD D NG V ++ + + +F S ++
Sbjct: 249 ----RVSVPENISSGTRVLMVNATDPDEGINGEVM-YSFRNMESKASEIFQLDSQTGEVQ 303
Query: 452 NAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENN 511
LD+E + Y +++ D G L + + I V D NDNAP T + SI EN+
Sbjct: 304 VRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENS 361
Query: 512 SPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTG---MLTVVKKLDREKEDKY 568
PG + ++ D DSG N +++ + P F L++ G L + LDRE Y
Sbjct: 362 PPGTVIALLNVQDQDSGENGQVSCFIPNHLP--FKLEKTYGNYYKLITSRVLDRELVQSY 419
Query: 569 LFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTD 628
T+ A D G PPL++ V++++ D NDN PVF H+ Y Y+PEN PR ++ +T D
Sbjct: 420 NITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALD 479
Query: 629 PDYGDNSAVTLSILDE-------NDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGG 681
PD N+ VT S+ D+ + +I+S TGV+ SFD E+ V A D G
Sbjct: 480 PDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSG 539
Query: 682 RVSRSSSAKVTINVVDVNDNKPVFIVPPY----NYSYELVLPSTNPGTVVFQVIAVDNDT 737
SS+ +++ V+D NDN P + P + EL S PG +V +V+AVD D+
Sbjct: 540 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDS 599
Query: 738 GMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSV 797
G NA + Y ++ + LFA+ + TG + D ++V D GQP +V
Sbjct: 600 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 659
Query: 798 VIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVV 857
+ +V A I E++ N+E +D+S Y+ + VAAV+ V
Sbjct: 660 TL-------TVAVADSIPEVLADLGSLESLANSETSDLSL----YLVVAVAAVSCIFLVF 708
Query: 858 VVIFI 862
V++ +
Sbjct: 709 VIVLL 713
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,033,493
Number of Sequences: 37866
Number of extensions: 1802334
Number of successful extensions: 14115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4680
Number of HSP's gapped (non-prelim): 949
length of query: 1048
length of database: 18,247,518
effective HSP length: 113
effective length of query: 935
effective length of database: 13,968,660
effective search space: 13060697100
effective search space used: 13060697100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.