Guide to the Human Genome
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Search of human proteins with 90421316

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b
[Homo sapiens]
         (613 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b ...  1241   0.0  
gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a ...  1241   0.0  
gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c ...  1241   0.0  
gi|31077211 hypoxia-inducible factor 1, alpha subunit isoform 2 ...   339   4e-93
gi|4504385 hypoxia-inducible factor 1, alpha subunit isoform 1 [...   339   4e-93
gi|40254439 endothelial PAS domain protein 1 [Homo sapiens]           335   9e-92
gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]        189   8e-48
gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]     189   8e-48
gi|21614542 single-minded homolog 1 [Homo sapiens]                    187   2e-47
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]    168   1e-41
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]    163   5e-40
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]              162   8e-40
gi|31745180 aryl hydrocarbon receptor nuclear translocator-like ...   105   9e-23
gi|4758010 clock [Homo sapiens]                                       103   6e-22
gi|68303555 aryl hydrocarbon receptor nuclear translocator 2 [Ho...    97   6e-20
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]               94   3e-19
gi|30795242 aryl hydrocarbon receptor nuclear translocator isofo...    93   6e-19
gi|4502231 aryl hydrocarbon receptor nuclear translocator isofor...    93   6e-19
gi|71852582 aryl hydrocarbon receptor nuclear translocator-like ...    92   1e-18
gi|71852580 aryl hydrocarbon receptor nuclear translocator-like ...    92   1e-18
gi|42716311 aryl hydrocarbon receptor nuclear translocator-like ...    92   1e-18
gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]              87   6e-17
gi|4502003 aryl hydrocarbon receptor [Homo sapiens]                    79   2e-14
gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]    68   3e-11
gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]    68   3e-11
gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]    68   3e-11
gi|5729858 nuclear receptor coactivator 2 [Homo sapiens]               64   5e-10
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]    63   7e-10
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]    63   7e-10
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]         51   3e-06

>gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b
           [Homo sapiens]
          Length = 613

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 60
           MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH
Sbjct: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 60

Query: 61  LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 120
           LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG
Sbjct: 61  LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 120

Query: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180
           RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL
Sbjct: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240
           GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK
Sbjct: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240

Query: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
           GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT
Sbjct: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300

Query: 301 EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR 360
           EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR
Sbjct: 301 EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR 360

Query: 361 LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL 420
           LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL
Sbjct: 361 LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL 420

Query: 421 DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE 480
           DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE
Sbjct: 421 DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE 480

Query: 481 PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 540
           PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP
Sbjct: 481 PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 540

Query: 541 SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG 600
           SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG
Sbjct: 541 SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG 600

Query: 601 GPFQPRAGSAQAD 613
           GPFQPRAGSAQAD
Sbjct: 601 GPFQPRAGSAQAD 613


>gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a
           [Homo sapiens]
          Length = 667

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 60
           MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH
Sbjct: 55  MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 114

Query: 61  LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 120
           LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG
Sbjct: 115 LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 174

Query: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180
           RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL
Sbjct: 175 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 234

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240
           GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK
Sbjct: 235 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 294

Query: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
           GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT
Sbjct: 295 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 354

Query: 301 EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR 360
           EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR
Sbjct: 355 EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR 414

Query: 361 LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL 420
           LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL
Sbjct: 415 LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL 474

Query: 421 DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE 480
           DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE
Sbjct: 475 DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE 534

Query: 481 PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 540
           PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP
Sbjct: 535 PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 594

Query: 541 SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG 600
           SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG
Sbjct: 595 SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG 654

Query: 601 GPFQPRAGSAQAD 613
           GPFQPRAGSAQAD
Sbjct: 655 GPFQPRAGSAQAD 667


>gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c
           [Homo sapiens]
          Length = 669

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 60
           MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH
Sbjct: 57  MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 116

Query: 61  LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 120
           LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG
Sbjct: 117 LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 176

Query: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180
           RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL
Sbjct: 177 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 236

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240
           GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK
Sbjct: 237 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 296

Query: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
           GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT
Sbjct: 297 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 356

Query: 301 EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR 360
           EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR
Sbjct: 357 EQHSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRR 416

Query: 361 LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL 420
           LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL
Sbjct: 417 LLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDL 476

Query: 421 DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE 480
           DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE
Sbjct: 477 DIAQDADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALE 536

Query: 481 PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 540
           PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP
Sbjct: 537 PSLLPRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 596

Query: 541 SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG 600
           SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG
Sbjct: 597 SPEHENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPG 656

Query: 601 GPFQPRAGSAQAD 613
           GPFQPRAGSAQAD
Sbjct: 657 GPFQPRAGSAQAD 669


>gi|31077211 hypoxia-inducible factor 1, alpha subunit isoform 2
           [Homo sapiens]
          Length = 735

 Score =  339 bits (870), Expect = 4e-93
 Identities = 161/301 (53%), Positives = 220/301 (73%), Gaps = 2/301 (0%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 60
           MRLTISYLR+ +L  AG+ +        ++  YLKAL+GFVMVLT +GDM Y+S+NV+K+
Sbjct: 60  MRLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY 119

Query: 61  LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 120
           +GL+Q EL GHS+FDF HPCD EE+++ LT +  L ++  E  T+R F LRMK TLTSRG
Sbjct: 120 MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRG 179

Query: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180
           RT+N+K+ATWKVL+C+GH+  Y   +     G    +PP+ CLVLICE IPHP ++E PL
Sbjct: 180 RTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGY--KKPPMTCLVLICEPIPHPSNIEIPL 237

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240
               FLSRHSLDMKF+YCD+RI E+ GY P++L+G S YEY HALDSD ++K+ H + +K
Sbjct: 238 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 297

Query: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
           GQ  TGQYR LA+ GGY+W +TQATV+   +  Q + IVCV++++S + +  ++ SL+QT
Sbjct: 298 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 357

Query: 301 E 301
           E
Sbjct: 358 E 358



 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 70/234 (29%), Positives = 101/234 (43%), Gaps = 47/234 (20%)

Query: 320 NPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRRLLGPILDGASVAATPSTPL 379
           +P  + +TP P + +   P    E AL  +P    S +L   +  I D     +  ST  
Sbjct: 451 SPLPTAETPKP-LRSSADPALNQEVALKLEPNPE-SLELSFTMPQIQDQTPSPSDGSTRQ 508

Query: 380 ATRHPQSP------LSADLPDELPVGTENVHRLFTSGKDTEAVETDLDIAQDADALDLEM 433
           ++  P SP      + +D+ +E  +  E V +LF   +DTEA        QD D LDLEM
Sbjct: 509 SSPEPNSPSEYCFYVDSDMVNEFKL--ELVEKLFA--EDTEAKNPFS--TQDTD-LDLEM 561

Query: 434 LAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALEPSLLPRWGSDPRL 493
           LAPYI MDDDFQL                      RSF  LSP  LE S      + P+ 
Sbjct: 562 LAPYIPMDDDFQL----------------------RSFDQLSP--LESSSASPESASPQS 597

Query: 494 SCS---SPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSPSPEH 544
           + +        +P+A++    A    L   ++D  E +++L       SPSP H
Sbjct: 598 TVTVFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKIL-----IASPSPTH 646


>gi|4504385 hypoxia-inducible factor 1, alpha subunit isoform 1
           [Homo sapiens]
          Length = 826

 Score =  339 bits (870), Expect = 4e-93
 Identities = 161/301 (53%), Positives = 220/301 (73%), Gaps = 2/301 (0%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKH 60
           MRLTISYLR+ +L  AG+ +        ++  YLKAL+GFVMVLT +GDM Y+S+NV+K+
Sbjct: 60  MRLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY 119

Query: 61  LGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRG 120
           +GL+Q EL GHS+FDF HPCD EE+++ LT +  L ++  E  T+R F LRMK TLTSRG
Sbjct: 120 MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRG 179

Query: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180
           RT+N+K+ATWKVL+C+GH+  Y   +     G    +PP+ CLVLICE IPHP ++E PL
Sbjct: 180 RTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGY--KKPPMTCLVLICEPIPHPSNIEIPL 237

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240
               FLSRHSLDMKF+YCD+RI E+ GY P++L+G S YEY HALDSD ++K+ H + +K
Sbjct: 238 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 297

Query: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
           GQ  TGQYR LA+ GGY+W +TQATV+   +  Q + IVCV++++S + +  ++ SL+QT
Sbjct: 298 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 357

Query: 301 E 301
           E
Sbjct: 358 E 358



 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 70/234 (29%), Positives = 101/234 (43%), Gaps = 47/234 (20%)

Query: 320 NPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRRLLGPILDGASVAATPSTPL 379
           +P  + +TP P + +   P    E AL  +P    S +L   +  I D     +  ST  
Sbjct: 451 SPLPTAETPKP-LRSSADPALNQEVALKLEPNPE-SLELSFTMPQIQDQTPSPSDGSTRQ 508

Query: 380 ATRHPQSP------LSADLPDELPVGTENVHRLFTSGKDTEAVETDLDIAQDADALDLEM 433
           ++  P SP      + +D+ +E  +  E V +LF   +DTEA        QD D LDLEM
Sbjct: 509 SSPEPNSPSEYCFYVDSDMVNEFKL--ELVEKLFA--EDTEAKNPFS--TQDTD-LDLEM 561

Query: 434 LAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALEPSLLPRWGSDPRL 493
           LAPYI MDDDFQL                      RSF  LSP  LE S      + P+ 
Sbjct: 562 LAPYIPMDDDFQL----------------------RSFDQLSP--LESSSASPESASPQS 597

Query: 494 SCS---SPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSPSPEH 544
           + +        +P+A++    A    L   ++D  E +++L       SPSP H
Sbjct: 598 TVTVFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKIL-----IASPSPTH 646


>gi|40254439 endothelial PAS domain protein 1 [Homo sapiens]
          Length = 870

 Score =  335 bits (858), Expect = 9e-92
 Identities = 199/492 (40%), Positives = 285/492 (57%), Gaps = 50/492 (10%)

Query: 1   MRLTISYLRMHRLCAA--GEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVS 58
           MRL IS+LR H+L ++   E        + +D  YLKALEGF+ V+T +GDM +LSEN+S
Sbjct: 57  MRLAISFLRTHKLLSSVCSENESEAEADQQMDNLYLKALEGFIAVVTQDGDMIFLSENIS 116

Query: 59  KHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQT--LSRRKVEAPTERCFSLRMKSTL 116
           K +GL+Q+EL GHSIFDF HPCD EE+++ L+ +      ++  +  TER F +RMK T+
Sbjct: 117 KFMGLTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTV 176

Query: 117 TSRGRTLNLKAATWKVLNCSGHMRAYKP-PAQTSPAGSPDSEPPLQCLVLICEAIPHPGS 175
           T+RGRT+NLK+ATWKVL+C+G ++ Y   P   S  G    EP L CL+++CE I HP  
Sbjct: 177 TNRGRTVNLKSATWKVLHCTGQVKVYNNCPPHNSLCGY--KEPLLSCLIIMCEPIQHPSH 234

Query: 176 LEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIH 235
           ++ PL    FLSRHS+DMKFTYCDDRI E+ GY P++L+G SAYE+ HALDS+ ++KS  
Sbjct: 235 MDIPLDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQ 294

Query: 236 TLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVL 295
            L +KGQ V+GQYR LA+ GGY+W +TQ TV+   R  Q + I+CV++++S++E+  VV 
Sbjct: 295 NLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVF 354

Query: 296 SLEQTEQHSRRPIQ----------RGAPSQKD-----------------TPNPGDSLDTP 328
           S++QTE   +  +           +GA S+K                   P PGD++ + 
Sbjct: 355 SMDQTESLFKPHLMAMNSIFDSSGKGAVSEKSNFLFTKLKEEPEELAQLAPTPGDAIISL 414

Query: 329 GPRILAFLHPPSLSEAAL------AADPRRFCSPDLRRLLGPILDGASVAATPSTPLATR 382
                 F    +  +A L      A + R   +      L       + A   +TP AT 
Sbjct: 415 DFGNQNFEESSAYGKAILPPSQPWATELRSHSTQSEAGSLPAFTVPQAAAPGSTTPSATS 474

Query: 383 HPQSPLSADLPDELPVGTEN------VHRLFTSGKDTEAVETDLDIAQDADALDLEMLAP 436
              S  + + P++     +N      + +LF    DTEA +       D + LDLE LAP
Sbjct: 475 SSSSCSTPNSPEDYYTSLDNDLKIEVIEKLF--AMDTEA-KDQCSTQTDFNELDLETLAP 531

Query: 437 YISMD-DDFQLN 447
           YI MD +DFQL+
Sbjct: 532 YIPMDGEDFQLS 543


>gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]
          Length = 667

 Score =  189 bits (479), Expect = 8e-48
 Identities = 116/310 (37%), Positives = 170/310 (54%), Gaps = 17/310 (5%)

Query: 1   MRLTISYLRMHRLCAAG---EWNQVGAGGEPLDAC-------YLKALEGFVMVLTAEGDM 50
           +RLT SYL+M  +   G    W Q    G PLD          L+ L+GFV V+ ++G +
Sbjct: 43  IRLTTSYLKMRAVFPEGLGDAWGQPSRAG-PLDGVAKELGSHLLQTLDGFVFVVASDGKI 101

Query: 51  AYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKV-EAPTERCFS 109
            Y+SE  S HLGLSQ+EL G+SI+++IHP D +E+   LT  Q L    + E   ER F 
Sbjct: 102 MYISETASVHLGLSQVELTGNSIYEYIHPSDHDEMTAVLTAHQPLHHHLLQEYEIERSFF 161

Query: 110 LRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEA 169
           LRMK  L  R     L  + +KV++CSG+++  +     S     DS   +  LV + ++
Sbjct: 162 LRMKCVLAKRNA--GLTCSGYKVIHCSGYLKIRQYMLDMSLY---DSCYQIVGLVAVGQS 216

Query: 170 IPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDA 229
           +P     E  L    F+ R SLD+K  + D R+ EV GY P DLI  + Y ++H  D   
Sbjct: 217 LPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEVTGYEPQDLIEKTLYHHVHGCDVFH 276

Query: 230 VSKSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVE 289
           +  + H LL KGQ  T  YR L++ GG++W Q+ ATVV   R  +   IV V+++++++E
Sbjct: 277 LRYAHHLLLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIE 336

Query: 290 ETGVVLSLEQ 299
              + LSLEQ
Sbjct: 337 YKELQLSLEQ 346


>gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]
          Length = 570

 Score =  189 bits (479), Expect = 8e-48
 Identities = 116/310 (37%), Positives = 170/310 (54%), Gaps = 17/310 (5%)

Query: 1   MRLTISYLRMHRLCAAG---EWNQVGAGGEPLDAC-------YLKALEGFVMVLTAEGDM 50
           +RLT SYL+M  +   G    W Q    G PLD          L+ L+GFV V+ ++G +
Sbjct: 43  IRLTTSYLKMRAVFPEGLGDAWGQPSRAG-PLDGVAKELGSHLLQTLDGFVFVVASDGKI 101

Query: 51  AYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKV-EAPTERCFS 109
            Y+SE  S HLGLSQ+EL G+SI+++IHP D +E+   LT  Q L    + E   ER F 
Sbjct: 102 MYISETASVHLGLSQVELTGNSIYEYIHPSDHDEMTAVLTAHQPLHHHLLQEYEIERSFF 161

Query: 110 LRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEA 169
           LRMK  L  R     L  + +KV++CSG+++  +     S     DS   +  LV + ++
Sbjct: 162 LRMKCVLAKRNA--GLTCSGYKVIHCSGYLKIRQYMLDMSLY---DSCYQIVGLVAVGQS 216

Query: 170 IPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDA 229
           +P     E  L    F+ R SLD+K  + D R+ EV GY P DLI  + Y ++H  D   
Sbjct: 217 LPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEVTGYEPQDLIEKTLYHHVHGCDVFH 276

Query: 230 VSKSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVE 289
           +  + H LL KGQ  T  YR L++ GG++W Q+ ATVV   R  +   IV V+++++++E
Sbjct: 277 LRYAHHLLLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIE 336

Query: 290 ETGVVLSLEQ 299
              + LSLEQ
Sbjct: 337 YKELQLSLEQ 346


>gi|21614542 single-minded homolog 1 [Homo sapiens]
          Length = 766

 Score =  187 bits (476), Expect = 2e-47
 Identities = 114/309 (36%), Positives = 165/309 (53%), Gaps = 15/309 (4%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAG---------GEPLDACYLKALEGFVMVLTAEGDMA 51
           +RLT SYL+M  +   G     G           G  L +  L+ L+GF+ V+  +G + 
Sbjct: 43  IRLTTSYLKMRVVFPEGLGEAWGHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIM 102

Query: 52  YLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKV-EAPTERCFSL 110
           Y+SE  S HLGLSQ+EL G+SI+++IHP D +E+   LT  Q      V E   ER F L
Sbjct: 103 YISETASVHLGLSQVELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFL 162

Query: 111 RMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAI 170
           RMK  L  R     L    +KV++CSG+++  +     SP    D       LV +  ++
Sbjct: 163 RMKCVLAKRNA--GLTCGGYKVIHCSGYLKIRQYSLDMSPF---DGCYQNVGLVAVGHSL 217

Query: 171 PHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAV 230
           P     E  L    F+ R SLDMK  + D R+AE+ GY P DLI  + Y ++H  D+  +
Sbjct: 218 PPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHL 277

Query: 231 SKSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEE 290
             + H LL KGQ  T  YRFLA+ GG++W Q+ AT+V   R  +   IV V+++++  E 
Sbjct: 278 RCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEY 337

Query: 291 TGVVLSLEQ 299
            G+ LSL+Q
Sbjct: 338 KGLQLSLDQ 346


>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
          Length = 901

 Score =  168 bits (426), Expect = 1e-41
 Identities = 114/389 (29%), Positives = 190/389 (48%), Gaps = 71/389 (18%)

Query: 1   MRLTISYLRMHRLCAAGE--WNQVGAGGEP------------------------LDACYL 34
           +RLTISYL+M      G+  WN    G  P                        L +  L
Sbjct: 64  IRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHIL 123

Query: 35  KALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL----- 89
           ++L+GFV  L  EG   Y+SE VS +LGLSQ+EL G S+FD++HP D  E+ + L     
Sbjct: 124 QSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLP 183

Query: 90  -------------------TPQQTLSRRKVEAPT----------ERCFSLRMKSTLTSRG 120
                              +  Q+ +   VE+ +          ER F +RMKSTLT RG
Sbjct: 184 PGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRG 243

Query: 121 RTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPL 180
             +++K++ +KV++ +G +R      + S +        +  LV++  A+P P   E  +
Sbjct: 244 --VHIKSSGYKVIHITGRLRL-----RVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRI 296

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSK 240
               F++R ++D+   YC++RI++    +P D++G   Y +IHA D + +  S   LL+K
Sbjct: 297 DCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNK 356

Query: 241 GQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
           GQ VT  YR++ ++GGY+W Q+ AT+    +    ++I+ V++L+S  E     + + Q 
Sbjct: 357 GQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQL 416

Query: 301 EQHSRRPIQRGAPSQKDTPNPGDSLDTPG 329
                   ++ + S + + +  DS DT G
Sbjct: 417 PHLP----EKTSESSETSDSESDSKDTSG 441


>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
          Length = 920

 Score =  163 bits (412), Expect = 5e-40
 Identities = 100/330 (30%), Positives = 172/330 (52%), Gaps = 45/330 (13%)

Query: 34  LKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL---- 89
           L++L+GFV  L  EG   Y+SE VS +LGLSQ+EL G S+FD++HP D  E+ + L    
Sbjct: 142 LQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKL 201

Query: 90  --------------------TPQQTLSRRKVEAPT----------ERCFSLRMKSTLTSR 119
                               +  Q+ +   VE+ +          ER F +RMKSTLT R
Sbjct: 202 PPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKR 261

Query: 120 GRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPP 179
           G  +++K++ +KV++ +G +R      + S +        +  LV++  A+P P   E  
Sbjct: 262 G--VHIKSSGYKVIHITGRLRL-----RVSLSHGRTVPSQIMGLVVVAHALPPPTINEVR 314

Query: 180 LGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS 239
           +    F++R ++D+   YC++RI++    +P D++G   Y +IHA D + +  S   LL+
Sbjct: 315 IDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLN 374

Query: 240 KGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQ 299
           KGQ VT  YR++ ++GGY+W Q+ AT+    +    ++I+ V++L+S  E     + + Q
Sbjct: 375 KGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQ 434

Query: 300 TEQHSRRPIQRGAPSQKDTPNPGDSLDTPG 329
                    ++ + S + + +  DS DT G
Sbjct: 435 LPHLP----EKTSESSETSDSESDSKDTSG 460


>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
          Length = 590

 Score =  162 bits (410), Expect = 8e-40
 Identities = 117/395 (29%), Positives = 183/395 (46%), Gaps = 82/395 (20%)

Query: 1   MRLTISYLRMHRLCAAGE--WNQVGAGG--------------------EPLDACYLKALE 38
           +RL+++YLR+ R  A G   W    AG                     + L    L++L+
Sbjct: 88  VRLSVTYLRLRRFAALGAPPWGLRAAGPPAGLAPGRRGPAALVSEVFEQHLGGHILQSLD 147

Query: 39  GFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL--------- 89
           GFV  L  EG   Y+SE VS +LGLSQ+E+ G S+FD+IHP D  E+ + L         
Sbjct: 148 GFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDHSEVLEQLGLRTPTPGP 207

Query: 90  ------------------TPQQTLSRRKVEAPT---ERCFSLRMKSTLTSRGRTLNLKAA 128
                             TP+   S  KV   +   ER F +RMKSTLT RG  L++KA+
Sbjct: 208 PTPPSVSSSSSSSSSLADTPEIEASLTKVPPSSLVQERSFFVRMKSTLTKRG--LHVKAS 265

Query: 129 TWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSR 188
            +KV++ +G +RA+                    LV +   +P     E PL     + R
Sbjct: 266 GYKVIHVTGRLRAHALG-----------------LVALGHTLPPAPLAELPLHGHMIVFR 308

Query: 189 HSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQY 248
            SL +    C+ R+++     P +L+G S Y+++H  D+  + +S   LL KGQ +TG Y
Sbjct: 309 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGYY 368

Query: 249 RFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVE---------ETGVVLSLEQ 299
           R+L R+GG++W Q+ ATV   G+ P    ++ V  ++SQ E         +    ++ E+
Sbjct: 369 RWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEE 428

Query: 300 TEQHSRRPIQRGAPSQ--KDTPNPGDSLDTPGPRI 332
                  P +   P++  +  P   ++  T G RI
Sbjct: 429 ASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRI 463


>gi|31745180 aryl hydrocarbon receptor nuclear translocator-like 2
           [Homo sapiens]
          Length = 636

 Score =  105 bits (263), Expect = 9e-23
 Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 38/311 (12%)

Query: 34  LKALEGFVMVLTAE-GDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCD----------- 81
           LK  EGF+ V+  E G + ++S++VSK L   Q  L G S+FDF+HP D           
Sbjct: 187 LKTAEGFLFVVGCERGKILFVSKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQLSSF 246

Query: 82  ----QEELQDALTPQQTLS-----RRKVEAPTERCFSLRMKSTLTS----RGRTLNLKAA 128
               +E+L DA T  Q  S     R +V + + R F  R+KS   S     G   N K  
Sbjct: 247 DISPREKLIDAKTGLQVHSNLHAGRTRVYSGSRRSFFCRIKSCKISVKEEHGCLPNSKKK 306

Query: 129 TWK---VLNCSGHMRAYKPP--AQTSPAGSPDSEPPLQCLVLICEAIPH---PGSLEPPL 180
             +    ++C+G++R++ P          S        CLV I    P+     S E  +
Sbjct: 307 EHRKFYTIHCTGYLRSWPPNIVGMEEERNSKKDNSNFTCLVAIGRLQPYIVPQNSGEINV 366

Query: 181 GRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALD-SDAVSKSIHTLLS 239
               F++R +++ KF Y D R   + GY P +L+G S YEY H  D ++   K    L S
Sbjct: 367 KPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQS 426

Query: 240 KGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETG----VVL 295
           K + +T  Y+F A+ G ++  ++Q    +     + E IV V+ L+    E G    +  
Sbjct: 427 KEKILTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLVLGHSEPGEASFLPC 486

Query: 296 SLEQTEQHSRR 306
           S + +E+ SR+
Sbjct: 487 SSQSSEESSRQ 497


>gi|4758010 clock [Homo sapiens]
          Length = 846

 Score =  103 bits (256), Expect = 6e-22
 Identities = 85/338 (25%), Positives = 148/338 (43%), Gaps = 51/338 (15%)

Query: 1   MRLTISYLRMHRLCAAG--------EWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAY 52
           ++ +I +LR H+   A         +W       E      L+AL+GF + +  +G + Y
Sbjct: 74  LQKSIDFLRKHKEITAQSDASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIY 133

Query: 53  LSENVSKHLGLSQLELIGHSIFDFIHPCDQEEL----------QDALTPQQTLSRRKVEA 102
           +SE+V+  L     +L+  SIF+FI   +  E+           D+LTP+   S+ ++E 
Sbjct: 134 VSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLE- 192

Query: 103 PTERCFSLRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAG---------S 153
                F   M      RG     + +T++ +   G+ ++    + ++  G          
Sbjct: 193 -----FCCHML-----RGTIDPKEPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRTHR 242

Query: 154 PDSEPPLQCLVLICEAIPH----PGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYS 209
           P  E  +  +  +  A P       ++E P     F SRHSL+ KF + D R   + GY 
Sbjct: 243 PSYEDRVCFVATVRLATPQFIKEMCTVEEP--NEEFTSRHSLEWKFLFLDHRAPPIIGYL 300

Query: 210 PDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSG 269
           P +++G S Y+Y H  D + ++K    L+  G+  +  YRFL +   ++W QT   +   
Sbjct: 301 PFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYH 360

Query: 270 GRGPQSESIVCVHFLISQVE-------ETGVVLSLEQT 300
               + E IVC H ++S  E       E G+  SL +T
Sbjct: 361 QWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPET 398


>gi|68303555 aryl hydrocarbon receptor nuclear translocator 2 [Homo
           sapiens]
          Length = 717

 Score = 96.7 bits (239), Expect = 6e-20
 Identities = 91/378 (24%), Positives = 160/378 (42%), Gaps = 73/378 (19%)

Query: 1   MRLTISYLRMHRLCAAGEWNQVGAGGEPLDACY--------------LKALEGFVMVLTA 46
           +R+ +S+++  R          G G +  D  Y              L+A +GF+ V+ A
Sbjct: 106 LRMAVSHMKSMR----------GTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAA 155

Query: 47  E-GDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL-TPQQTLSRRKVEAPT 104
           E G + Y+S++V+  L   Q E  G ++++ +HP D E+L++ L T + +++ R ++  T
Sbjct: 156 ETGRVIYVSDSVTPVLNQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKT 215

Query: 105 ------------------ERCFSLRMK--------------STLTSRGRT----LNLKAA 128
                              R F  RM+              +T+  R R     +    A
Sbjct: 216 GTVKKEGQQSSMRMCMGSRRSFICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEA 275

Query: 129 TWKVLNCSGHMRAYKPPAQTSPAGSPD-SEPPLQCLVLI----CEAIPHPGSLEPPLGRG 183
            + V++C+G+++A+ P   T P    D  +    CLV I      + P    +       
Sbjct: 276 QYAVVHCTGYIKAWPPAGMTIPEEDADVGQGSKYCLVAIGRLQVTSSPVCMDMNGMSVPT 335

Query: 184 AFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS-KGQ 242
            FLSRH+ D   T+ D R   V GY P DL+G    E+ H  D   + +S   ++  KGQ
Sbjct: 336 EFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQ 395

Query: 243 AVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQ 302
            ++  YRF  ++  ++  +T +         + E I+C +  + Q+++    L     E 
Sbjct: 396 VLSVMYRFRTKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNVKQLQQQQAEL-----EV 450

Query: 303 HSRRPIQRGAPSQKDTPN 320
           H R  +     SQ   PN
Sbjct: 451 HQRDGLSSYDLSQVPVPN 468


>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
          Length = 824

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 98/400 (24%), Positives = 165/400 (41%), Gaps = 38/400 (9%)

Query: 18  EWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFI 77
           +W       E      L+AL+GF++ +T +G + Y+S++++  LG    +++  ++ +F+
Sbjct: 74  DWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVSDSITPLLGHLPSDVMDQNLLNFL 133

Query: 78  HPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRGRTLNLKAATWKVLNCSG 137
              +  E+   L+    ++        +    L     L  RG     +  T++ +   G
Sbjct: 134 PEQEHSEVYKILSSHMLVTDSPSPEYLKSDSDLEFYCHLL-RGSLNPKEFPTYEYIKFVG 192

Query: 138 HMRAYKPPAQTSPAGSPD--SEP---PLQ---CLVLIC-----EAIPHPGSLEPPLGRGA 184
           + R+Y      S  G  +  S P   PL    C +        + +     ++ PL    
Sbjct: 193 NFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKEMCIVDEPLEE-- 250

Query: 185 FLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAV 244
           F SRHSL+ KF + D R   + GY P +++G S Y+Y H  D + +++    L+  G+  
Sbjct: 251 FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGK 310

Query: 245 TGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVE---ETGVVLSLEQTE 301
           +  YRFL +   ++W QT   +       + E IVC H ++S  +   E    L+LE   
Sbjct: 311 SCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPP 370

Query: 302 Q---HSRRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDL 358
               HS     +G  S  +     ++LD  G   L   H PS S  +         S   
Sbjct: 371 SEALHSSALKDKG--SSLEPRQHFNTLDV-GASGLNTSHSPSASSRSSHKSSHTAMSE-- 425

Query: 359 RRLLGPILDGASVAATPSTPLATRHPQSPLSADLPDELPV 398
                P      + A  STP        P SA LP ELPV
Sbjct: 426 -----PTSTPTKLMAEASTPAL------PRSATLPQELPV 454


>gi|30795242 aryl hydrocarbon receptor nuclear translocator isoform
           3 [Homo sapiens]
          Length = 774

 Score = 93.2 bits (230), Expect = 6e-19
 Identities = 76/330 (23%), Positives = 149/330 (45%), Gaps = 48/330 (14%)

Query: 1   MRLTISYLRMHR----LCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAE-GDMAYLSE 55
           +R+ +S+++  R        G +       + L    L+A +GF+ +++ E G + Y+S+
Sbjct: 117 LRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSD 176

Query: 56  NVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL-TPQQTLSRRKVEAPT---------- 104
           +V+  L   Q E  G +++D +HP D ++L++ L T +  L+ R ++  T          
Sbjct: 177 SVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQS 236

Query: 105 --------ERCFSLRMKSTLTS------------RGRTLNLKAAT------WKVLNCSGH 138
                    R F  RM+   +S            R R  N   +       + V++C+G+
Sbjct: 237 SMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGY 296

Query: 139 MRAYKPPAQTSPAGSPDSEPPLQ-CLVLI----CEAIPHPGSLEPPLGRGAFLSRHSLDM 193
           ++A+ P   + P   P++    + CLV I      + P+   +        F+SRH+++ 
Sbjct: 297 IKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEG 356

Query: 194 KFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS-KGQAVTGQYRFLA 252
            FT+ D R     GY P +L+G +  E+ H  D   +  S   ++  KGQ ++  +RF +
Sbjct: 357 IFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS 416

Query: 253 RSGGYLWTQTQATVVSGGRGPQSESIVCVH 282
           ++  +LW +T +         + E I+C +
Sbjct: 417 KNQEWLWMRTSSFTFQNPYSDEIEYIICTN 446


>gi|4502231 aryl hydrocarbon receptor nuclear translocator isoform 1
           [Homo sapiens]
          Length = 789

 Score = 93.2 bits (230), Expect = 6e-19
 Identities = 76/330 (23%), Positives = 149/330 (45%), Gaps = 48/330 (14%)

Query: 1   MRLTISYLRMHR----LCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAE-GDMAYLSE 55
           +R+ +S+++  R        G +       + L    L+A +GF+ +++ E G + Y+S+
Sbjct: 132 LRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSD 191

Query: 56  NVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL-TPQQTLSRRKVEAPT---------- 104
           +V+  L   Q E  G +++D +HP D ++L++ L T +  L+ R ++  T          
Sbjct: 192 SVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQS 251

Query: 105 --------ERCFSLRMKSTLTS------------RGRTLNLKAAT------WKVLNCSGH 138
                    R F  RM+   +S            R R  N   +       + V++C+G+
Sbjct: 252 SMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGY 311

Query: 139 MRAYKPPAQTSPAGSPDSEPPLQ-CLVLI----CEAIPHPGSLEPPLGRGAFLSRHSLDM 193
           ++A+ P   + P   P++    + CLV I      + P+   +        F+SRH+++ 
Sbjct: 312 IKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEG 371

Query: 194 KFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS-KGQAVTGQYRFLA 252
            FT+ D R     GY P +L+G +  E+ H  D   +  S   ++  KGQ ++  +RF +
Sbjct: 372 IFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS 431

Query: 253 RSGGYLWTQTQATVVSGGRGPQSESIVCVH 282
           ++  +LW +T +         + E I+C +
Sbjct: 432 KNQEWLWMRTSSFTFQNPYSDEIEYIICTN 461


>gi|71852582 aryl hydrocarbon receptor nuclear translocator-like
           isoform b [Homo sapiens]
          Length = 582

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 43/265 (16%)

Query: 34  LKALEGFVMVLTAE-GDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQ 92
           L+A +GF+ V+  + G + ++SE+V K L  SQ +LIG S+FD++HP D  ++++ L+  
Sbjct: 109 LRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSS 168

Query: 93  QTLSR-RKVEAPT-------------------ERCFSLRMKSTLTSRG-------RTLNL 125
            T  R R ++A T                    R F  RMK    S          T + 
Sbjct: 169 DTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSK 228

Query: 126 KA--ATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPP-----LQCLVLI----CEAIPHPG 174
           K    ++  ++ +G+++++ P   T      D+EP      L CLV I       +P P 
Sbjct: 229 KKDRKSFCTIHSTGYLKSWPP---TKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQPV 285

Query: 175 SLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSI 234
           + E  +    ++SRH++D KF + D R   +  Y P +L+G S YEY H  D   +++  
Sbjct: 286 NGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECH 345

Query: 235 HTLLSKGQAVTGQ-YRFLARSGGYL 258
             +L   + +T   Y+F  + G ++
Sbjct: 346 RQVLQTREKITTNCYKFKIKDGSFI 370


>gi|71852580 aryl hydrocarbon receptor nuclear translocator-like
           isoform a [Homo sapiens]
          Length = 625

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 43/265 (16%)

Query: 34  LKALEGFVMVLTAE-GDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQ 92
           L+A +GF+ V+  + G + ++SE+V K L  SQ +LIG S+FD++HP D  ++++ L+  
Sbjct: 152 LRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSS 211

Query: 93  QTLSR-RKVEAPT-------------------ERCFSLRMKSTLTSRG-------RTLNL 125
            T  R R ++A T                    R F  RMK    S          T + 
Sbjct: 212 DTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSK 271

Query: 126 KA--ATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPP-----LQCLVLI----CEAIPHPG 174
           K    ++  ++ +G+++++ P   T      D+EP      L CLV I       +P P 
Sbjct: 272 KKDRKSFCTIHSTGYLKSWPP---TKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQPV 328

Query: 175 SLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSI 234
           + E  +    ++SRH++D KF + D R   +  Y P +L+G S YEY H  D   +++  
Sbjct: 329 NGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECH 388

Query: 235 HTLLSKGQAVTGQ-YRFLARSGGYL 258
             +L   + +T   Y+F  + G ++
Sbjct: 389 RQVLQTREKITTNCYKFKIKDGSFI 413


>gi|42716311 aryl hydrocarbon receptor nuclear translocator-like
           isoform a [Homo sapiens]
          Length = 625

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 43/265 (16%)

Query: 34  LKALEGFVMVLTAE-GDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQ 92
           L+A +GF+ V+  + G + ++SE+V K L  SQ +LIG S+FD++HP D  ++++ L+  
Sbjct: 152 LRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSS 211

Query: 93  QTLSR-RKVEAPT-------------------ERCFSLRMKSTLTSRG-------RTLNL 125
            T  R R ++A T                    R F  RMK    S          T + 
Sbjct: 212 DTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSK 271

Query: 126 KA--ATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPP-----LQCLVLI----CEAIPHPG 174
           K    ++  ++ +G+++++ P   T      D+EP      L CLV I       +P P 
Sbjct: 272 KKDRKSFCTIHSTGYLKSWPP---TKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQPV 328

Query: 175 SLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSI 234
           + E  +    ++SRH++D KF + D R   +  Y P +L+G S YEY H  D   +++  
Sbjct: 329 NGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECH 388

Query: 235 HTLLSKGQAVTGQ-YRFLARSGGYL 258
             +L   + +T   Y+F  + G ++
Sbjct: 389 RQVLQTREKITTNCYKFKIKDGSFI 413


>gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]
          Length = 802

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 109/416 (26%), Positives = 169/416 (40%), Gaps = 51/416 (12%)

Query: 2   RLTISYLRMHRL-CAAGEWNQVGAGGEPLDAC-----------YLKALEGFVMVLTAEGD 49
           ++ +SYL +  L C         AGG PL               + AL GF++V TAEG 
Sbjct: 34  KVRLSYLHIMSLACIYTRKGVFFAGGTPLAGPTGLLSAQELEDIVAALPGFLLVFTAEGK 93

Query: 50  MAYLSENVSKHLGLSQLELI--GHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERC 107
           + YLSE+VS+HLG S ++L+  G SI+D I P D   ++  LT    L        T+R 
Sbjct: 94  LLYLSESVSEHLGHSMVDLVAQGDSIYDIIDPADHLTVRQQLTLPSALD-------TDRL 146

Query: 108 FSLRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLIC 167
           F  R  ++     ++L  ++A  K++   G   A+ P A    AG+P        L    
Sbjct: 147 FRCRFNTS-----KSLRRQSAGNKLVLIRGRFHAHPPGAYW--AGNPVFTAFCAPLEPRP 199

Query: 168 EAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDS 227
              P PG     L    F SRH+ D+      + +    G+   +L+  S Y  +H  D 
Sbjct: 200 RPGPGPGPGPASLFLAMFQSRHAKDLALLDISESVLIYLGFERSELLCKSWYGLLHPEDL 259

Query: 228 DAVSKSIHTLLSKGQAVTGQ--YRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLI 285
              S   + LL++   +  +   R  A++GG+ W         G  GP    I   ++ I
Sbjct: 260 AHASAQHYRLLAESGDIQAEMVVRLQAKTGGWAWIYC-LLYSEGPEGP----ITANNYPI 314

Query: 286 SQVEETGVVLSLEQTEQHSRRPIQRGAP-----------SQKD--TPNPGDSLDTPGPRI 332
           S +E   +   L   +  +   +  G P           SQ++  + NP  +     PR 
Sbjct: 315 SDMEAWSLRQQLNSEDTQAAYVL--GTPTMLPSFPENILSQEECSSTNPLFTAALGAPRS 372

Query: 333 LAFLHPPSLSEAALAAD-PRRFCSPDLRRLLGPILDGASVAATPSTPLATRHPQSP 387
            +F   P LS  + + + PR     D   L  P     S+ A  S  L    P +P
Sbjct: 373 TSFPSAPELSVVSASEELPRPSKELDFSYLTFPSGPEPSLQAELSKDLVCTPPYTP 428


>gi|4502003 aryl hydrocarbon receptor [Homo sapiens]
          Length = 848

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 38/262 (14%)

Query: 34  LKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQD----AL 89
           L+AL GFV+V+T +  + Y S  +  +LG  Q ++I  S+++ IH  D+ E Q     AL
Sbjct: 119 LQALNGFVLVVTTDALVFYASSTIQDYLGFQQSDVIHQSVYELIHTEDRAEFQRQLHWAL 178

Query: 90  TPQQ-TLSRRKVEAPT----------------------ERCFSLRMKSTLTSRGRTLNLK 126
            P Q T S + +E  T                      ERCF  R++  L +        
Sbjct: 179 NPSQCTESGQGIEEATGLPQTVVCYNPDQIPPENSPLMERCFICRLRCLLDN-------- 230

Query: 127 AATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRGAFL 186
           ++ +  +N  G ++      +    GS    PP   L  I   +  P  LE       F 
Sbjct: 231 SSGFLAMNFQGKLKYLHGQKKKGKDGS--ILPPQLALFAIATPLQPPSILEIRTKNFIFR 288

Query: 187 SRHSLDMKFTYCDDRIAEVAGYSPDDL-IGCSAYEYIHALDSDAVSKSIHTLLSKGQAVT 245
           ++H LD     CD +   V GY+  +L    S Y++IHA D    ++S   ++  G++  
Sbjct: 289 TKHKLDFTPIGCDAKGRIVLGYTEAELCTRGSGYQFIHAADMLYCAESHIRMIKTGESGM 348

Query: 246 GQYRFLARSGGYLWTQTQATVV 267
             +R L ++  + W Q+ A ++
Sbjct: 349 IVFRLLTKNNRWTWVQSNARLL 370


>gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
          Length = 1399

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 24/303 (7%)

Query: 27  EPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQ 86
           E L    L+AL+GF  V+  EG + ++SENV+ +LG +Q EL+  S++  +H  D  E  
Sbjct: 110 ESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFV 169

Query: 87  DALTPQQTLS----RRKVEAPTERCFSLRMKSTLTSRGRTLNLKAA-TWKVLNCSGHMRA 141
             L P+  ++     ++        F+ RM         T N +A   ++V+ C      
Sbjct: 170 KNLLPKSLVNGVPWPQEATRRNSHTFNCRMLIHPPDEPGTENQEACQRYEVMQCF----- 224

Query: 142 YKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDR 201
                    +   D E    CL+ I   +P P ++    G  +F+++     K    D  
Sbjct: 225 ---TVSQPKSIQEDGEDFQSCLICIARRLPRPPAI---TGVESFMTKQDTTGKIISIDTS 278

Query: 202 IAEVAGYSP-DDLIGCSAYEYI--HALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 258
               AG +  +DL+    Y +      +     +    ++++G A +  YRF+   G  L
Sbjct: 279 SLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 338

Query: 259 WTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRRPIQRGAPSQKDT 318
              T+  +           I+ +H  I   E +G+     Q + +S   I R  PS   +
Sbjct: 339 SAHTKCKLCYPQSPDMQPFIMGIH--IIDREHSGL---SPQDDTNSGMSIPRVNPSVNPS 393

Query: 319 PNP 321
            +P
Sbjct: 394 ISP 396


>gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
          Length = 1440

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 24/303 (7%)

Query: 27  EPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQ 86
           E L    L+AL+GF  V+  EG + ++SENV+ +LG +Q EL+  S++  +H  D  E  
Sbjct: 110 ESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFV 169

Query: 87  DALTPQQTLS----RRKVEAPTERCFSLRMKSTLTSRGRTLNLKAA-TWKVLNCSGHMRA 141
             L P+  ++     ++        F+ RM         T N +A   ++V+ C      
Sbjct: 170 KNLLPKSLVNGVPWPQEATRRNSHTFNCRMLIHPPDEPGTENQEACQRYEVMQCF----- 224

Query: 142 YKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDR 201
                    +   D E    CL+ I   +P P ++    G  +F+++     K    D  
Sbjct: 225 ---TVSQPKSIQEDGEDFQSCLICIARRLPRPPAI---TGVESFMTKQDTTGKIISIDTS 278

Query: 202 IAEVAGYSP-DDLIGCSAYEYI--HALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 258
               AG +  +DL+    Y +      +     +    ++++G A +  YRF+   G  L
Sbjct: 279 SLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 338

Query: 259 WTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRRPIQRGAPSQKDT 318
              T+  +           I+ +H  I   E +G+     Q + +S   I R  PS   +
Sbjct: 339 SAHTKCKLCYPQSPDMQPFIMGIH--IIDREHSGL---SPQDDTNSGMSIPRVNPSVNPS 393

Query: 319 PNP 321
            +P
Sbjct: 394 ISP 396


>gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
          Length = 1441

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 24/303 (7%)

Query: 27  EPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQ 86
           E L    L+AL+GF  V+  EG + ++SENV+ +LG +Q EL+  S++  +H  D  E  
Sbjct: 110 ESLGPLLLEALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFV 169

Query: 87  DALTPQQTLS----RRKVEAPTERCFSLRMKSTLTSRGRTLNLKAA-TWKVLNCSGHMRA 141
             L P+  ++     ++        F+ RM         T N +A   ++V+ C      
Sbjct: 170 KNLLPKSLVNGVPWPQEATRRNSHTFNCRMLIHPPDEPGTENQEACQRYEVMQCF----- 224

Query: 142 YKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDR 201
                    +   D E    CL+ I   +P P ++    G  +F+++     K    D  
Sbjct: 225 ---TVSQPKSIQEDGEDFQSCLICIARRLPRPPAI---TGVESFMTKQDTTGKIISIDTS 278

Query: 202 IAEVAGYSP-DDLIGCSAYEYI--HALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 258
               AG +  +DL+    Y +      +     +    ++++G A +  YRF+   G  L
Sbjct: 279 SLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 338

Query: 259 WTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRRPIQRGAPSQKDT 318
              T+  +           I+ +H  I   E +G+     Q + +S   I R  PS   +
Sbjct: 339 SAHTKCKLCYPQSPDMQPFIMGIH--IIDREHSGL---SPQDDTNSGMSIPRVNPSVNPS 393

Query: 319 PNP 321
            +P
Sbjct: 394 ISP 396


>gi|5729858 nuclear receptor coactivator 2 [Homo sapiens]
          Length = 1464

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 34/319 (10%)

Query: 27  EPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQ 86
           + L    L+AL+GF  V+  EG++ ++SENV+++L  +Q EL+  S++  +H  D  E  
Sbjct: 113 DALGPMMLEALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFV 172

Query: 87  DALTPQQTLSRRKVEAPTER----CFSLRM----KSTLTSRGRTLNLKAATWKVLNCSGH 138
             L P+  ++         R     F+ RM           G         ++ + C   
Sbjct: 173 KNLLPKSIVNGGSWSGEPPRRNSHTFNCRMLVKPLPDSEEEGHDNQEAHQKYETMQCF-- 230

Query: 139 MRAYKPPAQTSPAGSPDSEPPLQ-CLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTY 197
                  A + P    +    LQ CL+ +   +P       P    +F +R  L  K T 
Sbjct: 231 -------AVSQPKSIKEEGEDLQSCLICVARRVPMKERPVLPSSE-SFTTRQDLQGKITS 282

Query: 198 CDD---RIAEVAGYSPDDLIGCSAYEYIHALDSDAVS---KSIHTLLSKGQAVTGQYRFL 251
            D    R A   G+  +DL+     ++    + ++VS   +  H +L +G A +  YRF 
Sbjct: 283 LDTSTMRAAMKPGW--EDLVRRCIQKFHAQHEGESVSYAKRHHHEVLRQGLAFSQIYRFS 340

Query: 252 ARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRR---PI 308
              G  +  QT++ ++      + + ++ +H L    E+   V++ + T Q   +   PI
Sbjct: 341 LSDGTLVAAQTKSKLIRSQTTNEPQLVISLHML--HREQNVCVMNPDLTGQTMGKPLNPI 398

Query: 309 QRGAPSQKD--TPNPGDSL 325
              +P+ +   + NPG  +
Sbjct: 399 SSNSPAHQALCSGNPGQDM 417


>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
          Length = 1424

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 75/329 (22%), Positives = 130/329 (39%), Gaps = 24/329 (7%)

Query: 27  EPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQ 86
           + L    L+AL+GF+ V+  +G++ ++SENV+++L   Q +L+  S+++ +H  D+++  
Sbjct: 111 DSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYNILHEEDRKDFL 170

Query: 87  DALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPA 146
             L P+ T++       T+     R KS   +    +       + +N S  MR      
Sbjct: 171 KNL-PKSTVNGVSWTNETQ-----RQKSHTFNCRMLMKTPHDILEDINASPEMRQRYETM 224

Query: 147 QTSPAGSP-----DSEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDD- 200
           Q      P     + E    C++ +   I   G    P    +F++RH L  K    D  
Sbjct: 225 QCFALSQPRAMMEEGEDLQSCMICVARRIT-TGERTFPSNPESFITRHDLSGKVVNIDTN 283

Query: 201 --RIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIH--TLLSKGQAVTGQYRFLARSGG 256
             R +   G+  +D+I      +    D  + S+  H       G A T  YRF    G 
Sbjct: 284 SLRSSMRPGF--EDIIRRCIQRFFSLNDGQSWSQKRHYQEAYLNGHAETPVYRFSLADGT 341

Query: 257 YLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRRPIQRGAPSQK 316
            +  QT++ +            V  HFL  Q E+ G   +     Q  R P+  G  S  
Sbjct: 342 IVTAQTKSKLFRNPVTNDRHGFVSTHFL--QREQNGYRPNPNPVGQGIRPPM-AGCNSSV 398

Query: 317 D--TPNPGDSLDTPGPRILAFLHPPSLSE 343
              + +P   L  P  R      P +  +
Sbjct: 399 GGMSMSPNQGLQMPSSRAYGLADPSTTGQ 427


>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
          Length = 1420

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 75/329 (22%), Positives = 130/329 (39%), Gaps = 24/329 (7%)

Query: 27  EPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQ 86
           + L    L+AL+GF+ V+  +G++ ++SENV+++L   Q +L+  S+++ +H  D+++  
Sbjct: 111 DSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYNILHEEDRKDFL 170

Query: 87  DALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPA 146
             L P+ T++       T+     R KS   +    +       + +N S  MR      
Sbjct: 171 KNL-PKSTVNGVSWTNETQ-----RQKSHTFNCRMLMKTPHDILEDINASPEMRQRYETM 224

Query: 147 QTSPAGSP-----DSEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDD- 200
           Q      P     + E    C++ +   I   G    P    +F++RH L  K    D  
Sbjct: 225 QCFALSQPRAMMEEGEDLQSCMICVARRIT-TGERTFPSNPESFITRHDLSGKVVNIDTN 283

Query: 201 --RIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIH--TLLSKGQAVTGQYRFLARSGG 256
             R +   G+  +D+I      +    D  + S+  H       G A T  YRF    G 
Sbjct: 284 SLRSSMRPGF--EDIIRRCIQRFFSLNDGQSWSQKRHYQEAYLNGHAETPVYRFSLADGT 341

Query: 257 YLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHSRRPIQRGAPSQK 316
            +  QT++ +            V  HFL  Q E+ G   +     Q  R P+  G  S  
Sbjct: 342 IVTAQTKSKLFRNPVTNDRHGFVSTHFL--QREQNGYRPNPNPVGQGIRPPM-AGCNSSV 398

Query: 317 D--TPNPGDSLDTPGPRILAFLHPPSLSE 343
              + +P   L  P  R      P +  +
Sbjct: 399 GGMSMSPNQGLQMPSSRAYGLADPSTTGQ 427


>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
          Length = 719

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 89/425 (20%), Positives = 149/425 (35%), Gaps = 106/425 (24%)

Query: 1   MRLTISYLRMH---RLCAAGEWNQVGAGG-EPLDAC------------YLKALEGFVMVL 44
           +RL++SYLR+    ++       Q  AG   P D+C             L++L GF +V+
Sbjct: 71  LRLSVSYLRVKSFFQVVQEQSSRQPAAGAPSPGDSCPLAGSAVLEGRLLLESLNGFALVV 130

Query: 45  TAEGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQE----ELQDALTPQQTLSRRK- 99
           +AEG + Y S  +  +LG  Q +++  +I+D+IH  D++    +L  A+ P Q +  +  
Sbjct: 131 SAEGTIFYASATIVDYLGFHQTDVMHQNIYDYIHVDDRQDFCRQLHWAMDPPQVVFGQPP 190

Query: 100 --------------------VEAPTE------RCFSLRMKSTLTSRGRTLNLKAATWKVL 133
                                  PTE      RCF  R++  L S    L   +  W++ 
Sbjct: 191 PLETGDDAILGRLLRAQEWGTGTPTEYSAFLTRCFICRVRCLLDSTSGFLARGSQAWQLR 250

Query: 134 NC----------SGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRG 183
            C           G ++      + +P+G+    PP   L  I   +  P + E  +   
Sbjct: 251 LCCPEPLMTMQFQGKLKFLFGQKKKAPSGA--MLPPRLSLFCIAAPVLLPSAAEMKMRSA 308

Query: 184 AFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQA 243
              ++   D   T  D ++         +L G   Y       +   S+    L+ + Q 
Sbjct: 309 LLRAKPRADTAAT-ADAKVKATTSLCESELHGKPNY------SAGRSSRESGVLVLREQT 361

Query: 244 VTGQYRFLARSGGYLWTQTQATVV---SGGRGPQSESIVCVHFLISQVEETGVVLSLEQT 300
             G++  +      L  +    +V    GG G + E                        
Sbjct: 362 DAGRWAQVPARAPCLCLRGGPDLVLDPKGGSGDREE------------------------ 397

Query: 301 EQHSRRPIQRGAPSQKDTPNPGDSL---------DTPGPRILAFLHPPSLSEAALAADPR 351
           EQH       G   +++TP P   L         D   PR    L P      +L   PR
Sbjct: 398 EQHRMLSRASGVTGRRETPGPTKPLPWTAGKHSEDGARPR----LQPSKNDPPSLRPMPR 453

Query: 352 RFCSP 356
             C P
Sbjct: 454 GSCLP 458


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,660,287
Number of Sequences: 37866
Number of extensions: 1617615
Number of successful extensions: 6465
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 6138
Number of HSP's gapped (non-prelim): 431
length of query: 613
length of database: 18,247,518
effective HSP length: 108
effective length of query: 505
effective length of database: 14,157,990
effective search space: 7149784950
effective search space used: 7149784950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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