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Search of human proteins with 6996014
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6996014 histidyl-tRNA synthetase [Homo sapiens]
(509 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6996014 histidyl-tRNA synthetase [Homo sapiens] 999 0.0
gi|15029520 histidyl-tRNA synthetase 2 precursor [Homo sapiens] 741 0.0
gi|65287717 eukaryotic translation initiation factor 2 alpha kin... 142 6e-34
gi|14043022 methionyl-tRNA synthetase [Homo sapiens] 40 0.004
gi|21735548 centrosomal protein 2 [Homo sapiens] 37 0.033
gi|89886470 hypothetical protein LOC84960 [Homo sapiens] 37 0.043
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 35 0.12
gi|212276096 leucine rich repeat (in FLII) interacting protein 1... 35 0.21
gi|212276078 leucine rich repeat (in FLII) interacting protein 1... 35 0.21
gi|197276647 leucine rich repeat (in FLII) interacting protein 2... 33 0.61
gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i... 33 0.61
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens] 33 0.61
gi|27597085 tropomyosin 1 alpha chain isoform 5 [Homo sapiens] 32 1.0
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 32 1.8
gi|41352705 kinesin family member 3C [Homo sapiens] 32 1.8
gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens] 31 3.0
gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens] 31 3.0
gi|109134347 NY-REN-58 antigen [Homo sapiens] 31 3.0
gi|109134355 NY-REN-58 antigen [Homo sapiens] 31 3.0
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 30 4.0
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 30 4.0
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 30 4.0
gi|221316556 ATP-binding cassette, sub-family C, member 3 isofor... 30 5.2
gi|9955970 ATP-binding cassette, sub-family C, member 3 isoform ... 30 5.2
gi|63252904 tropomyosin 1 alpha chain isoform 6 [Homo sapiens] 30 5.2
gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens] 30 5.2
gi|63252898 tropomyosin 1 alpha chain isoform 1 [Homo sapiens] 30 5.2
gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens] 30 5.2
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 30 6.8
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 30 6.8
>gi|6996014 histidyl-tRNA synthetase [Homo sapiens]
Length = 509
Score = 999 bits (2582), Expect = 0.0
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPK 60
MAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPK
Sbjct: 1 MAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPK 60
Query: 61 GTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ 120
GTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ
Sbjct: 61 GTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ 120
Query: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG
Sbjct: 121 GGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 180
Query: 181 NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDK 240
NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDK
Sbjct: 181 NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDK 240
Query: 241 LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG 300
LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG
Sbjct: 241 LDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLG 300
Query: 301 DLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG 360
DLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG
Sbjct: 301 DLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG 360
Query: 361 GRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKL 420
GRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKL
Sbjct: 361 GRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKL 420
Query: 421 LEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRS 480
LEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRS
Sbjct: 421 LEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRS 480
Query: 481 VTSREEVDVRREDLVEEIKRRTGQPLCIC 509
VTSREEVDVRREDLVEEIKRRTGQPLCIC
Sbjct: 481 VTSREEVDVRREDLVEEIKRRTGQPLCIC 509
>gi|15029520 histidyl-tRNA synthetase 2 precursor [Homo sapiens]
Length = 506
Score = 741 bits (1912), Expect = 0.0
Identities = 361/473 (76%), Positives = 416/473 (87%), Gaps = 1/473 (0%)
Query: 32 EEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEV 91
+ +VA+ + L +QL + K F++KTPKGTRD SP+ M VREK+ D++I CFKRHGA+
Sbjct: 34 QSQVAEAV-LTSQLKAHQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAKG 92
Query: 92 IDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYH 151
+DTP FELKETL KYGEDS L+YDLKDQGGELLSLRYDLTVPFARYLAMNK+ +KRYH
Sbjct: 93 MDTPAFELKETLTEKYGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYH 152
Query: 152 IAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKV 211
+ KV+RR++P + +GRYREF QCDFDIAG FDPMIPDAECLKIMCEILS LQ+GDFL+KV
Sbjct: 153 VGKVWRRESPTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKV 212
Query: 212 NDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYV 271
NDRRI+DGMFA+CGV +SKFR ICSS+DKLDK++W++V++EMV +KGLAPEVADRIGDYV
Sbjct: 213 NDRRIVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEVADRIGDYV 272
Query: 272 QQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYY 331
Q HGGVSLVEQ+ QDP+LSQNKQALEGLGDLKLLFEYLTLFGI DKISFDLSLARGLDYY
Sbjct: 273 QCHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYY 332
Query: 332 TGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFS 391
TGVIYEAVLLQTP QAGEEPL VGSVAAGGRYDGLVGMFDPKG KVPCVGLSIGVERIF
Sbjct: 333 TGVIYEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGLSIGVERIFY 392
Query: 392 IVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQ 451
IVEQR++ EK+RTTETQV VA+ QK L+ERLKL++ELWD+GIKAE+LYK NPKLL Q
Sbjct: 393 IVEQRMKTKGEKVRTTETQVFVATPQKNFLQERLKLIAELWDSGIKAEMLYKNNPKLLTQ 452
Query: 452 LQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 504
L YCE GIPLV IIGEQELK+GVIK+RSV SREEV ++RE+ V EI++R +
Sbjct: 453 LHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENFVAEIQKRLSE 505
>gi|65287717 eukaryotic translation initiation factor 2 alpha kinase 4
[Homo sapiens]
Length = 1649
Score = 142 bits (359), Expect = 6e-34
Identities = 115/452 (25%), Positives = 213/452 (47%), Gaps = 31/452 (6%)
Query: 64 DYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGE 123
++S R +++ V + IIR FKRHGA + TP+ + + ++ E + + D G
Sbjct: 1055 NFSIRTAKMQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEHNEAALFM----DHSGM 1110
Query: 124 LLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA-GNF 182
L+ L +DL +PFARY+A N + N+KRY I +V+R + R +E +C FDI
Sbjct: 1111 LVMLPFDLRIPFARYVARNNILNLKRYCIERVFRPRK--LDRFHPKELLECAFDIVTSTT 1168
Query: 183 DPMIPDAECLKIMCEILS---SLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVD 239
+ +P AE + + EI+ +LQ ++ + +N +L + CG+ + K + +
Sbjct: 1169 NSFLPTAEIIYTIYEIIQEFPALQERNYSIYLNHTMLLKAILLHCGIPEDKLSQVY--II 1226
Query: 240 KLDKVSWEEVKNEMVGE---KGLAPEVADRIGDYVQQHGGVS----LVEQLLQDPKLSQN 292
D V+ + + E+ + L+ R+ +++Q G + + L++ K
Sbjct: 1227 LYDAVTEKLTRREVEAKFCNLSLSSNSLCRLYKFIEQKGDLQDLMPTINSLIKQ-KTGIA 1285
Query: 293 KQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPL 352
+ GL DL+ + L GI ++ +L L + + G+I++ V Q +
Sbjct: 1286 QLVKYGLKDLEEVVGLLKKLGIKLQVLINLGLVYKVQQHNGIIFQFVAFIKRRQRAVPEI 1345
Query: 353 GVGSVAAGGRYDGLVGMF---DPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTET 409
+AAGGRYD L+ F G +G+SI +++I + V +EE + +
Sbjct: 1346 ----LAAGGRYDLLIPQFRGPQALGPVPTAIGVSIAIDKISAAVLN----MEESVTISSC 1397
Query: 410 QVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQ 469
+LV S + + + L +LW AGI AE++Y + +YC I VA++ ++
Sbjct: 1398 DLLVVSVGQMSMSRAINLTQKLWTAGITAEIMYDWSQSQEELQEYCRHHEITYVALVSDK 1457
Query: 470 ELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 501
E +K + E V +LV+ + ++
Sbjct: 1458 EGSHVKVKSFEKERQTEKRVLETELVDHVLQK 1489
>gi|14043022 methionyl-tRNA synthetase [Homo sapiens]
Length = 900
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 4 RAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTR 63
+A ++E+ K QG VR LK QKA + EVAKLL LK QL E K + PKG +
Sbjct: 843 QALMDEVTK-QGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPP---EAPKGKK 898
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 37.4 bits (85), Expect = 0.033
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 393 VEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQL 452
+ Q+L LEE+ ++ V S + + R L +L +A + E L++KN L QL
Sbjct: 615 LNQQLLQLEEENQS------VCSRMEAAEQARNALQVDLAEAEKRREALWEKNTHLEAQL 668
Query: 453 QYCEEAGIPLVAIIGE-QELKDGVIKLRSVT--SREEVDVRREDLVEEIKRR 501
Q EEAG L A + + QE K+ + K S + +E + E L +E KR+
Sbjct: 669 QKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLHQEAKRQ 720
>gi|89886470 hypothetical protein LOC84960 [Homo sapiens]
Length = 534
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 398 EALEEKIRTTETQVLVASAQKKLLEERLKLV---SELWDAGIKAELLYKKNPK--LLNQL 452
E L+ + + T T + + + E++K S +WD I + L ++N + L Q+
Sbjct: 279 ETLKLRRKETSTAEMEYQSGVTAVVEKVKSAVRCSHVWD--ITSRFLAQRNTEENLELQM 336
Query: 453 QYCEEAGIPLVAIIGEQELKDGVIKLR---SVTSREEVDVRREDLVEEIKRR 501
+ CEE + L A++ + EL++ V+K R S S + V+ + D+++E + R
Sbjct: 337 EDCEERRVQLKALVKQLELEEAVLKFRQKPSSISFKSVEKKMTDMLKEEEER 388
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 35.4 bits (80), Expect = 0.12
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 387 ERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNP 446
E+ S + RL L ++I E Q+L A+ + K LEE ++L ++ +AG +LLYK+
Sbjct: 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQL-KKISEAG--KDLLYKQLS 499
Query: 447 KLLNQLQYCEEAGIPL--------VAIIGEQ-ELKDGVIKLRSVTSRE 485
L + + + L I G+Q E+KD I + S+ S++
Sbjct: 500 GRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKD 547
>gi|212276096 leucine rich repeat (in FLII) interacting protein 1
isoform 3 [Homo sapiens]
Length = 808
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 8 EELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSP 67
+++ ++G+ ++GLK+ K S +EE+ K + AQL +++ + + T K
Sbjct: 144 DQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELE 203
Query: 68 RQMAVREKVFDVIIRCFKR--HGAEVIDTPVFELKETL 103
Q+A + ++ + F+R H ++ E+KE L
Sbjct: 204 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 241
>gi|212276078 leucine rich repeat (in FLII) interacting protein 1
isoform 1 [Homo sapiens]
Length = 640
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 8 EELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSP 67
+++ ++G+ ++GLK+ K S +EE+ K + AQL +++ + + T K
Sbjct: 272 DQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELE 331
Query: 68 RQMAVREKVFDVIIRCFKR--HGAEVIDTPVFELKETL 103
Q+A + ++ + F+R H ++ E+KE L
Sbjct: 332 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 369
>gi|197276647 leucine rich repeat (in FLII) interacting protein 2
isoform 3 [Homo sapiens]
Length = 424
Score = 33.1 bits (74), Expect = 0.61
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 8 EELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSP 67
+++ ++G ++GLK+ K S +EE+ K + AQL +++ + + T K +
Sbjct: 120 DQIQDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQE 179
Query: 68 RQMA--VREKVFDVIIRCFKRHGAEVIDTPVFELKETL 103
QMA RE ++H V+ + ELKE L
Sbjct: 180 EQMAEFYRENEEKSKELERQKHMCSVLQHKMEELKEGL 217
>gi|5453726 leucine rich repeat (in FLII) interacting protein 2
isoform 1 [Homo sapiens]
Length = 721
Score = 33.1 bits (74), Expect = 0.61
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 8 EELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSP 67
+++ ++G ++GLK+ K S +EE+ K + AQL +++ + + T K +
Sbjct: 352 DQIQDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQE 411
Query: 68 RQMA--VREKVFDVIIRCFKRHGAEVIDTPVFELKETL 103
QMA RE ++H V+ + ELKE L
Sbjct: 412 EQMAEFYRENEEKSKELERQKHMCSVLQHKMEELKEGL 449
>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
Length = 1512
Score = 33.1 bits (74), Expect = 0.61
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 3 ERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQ 44
E L + V QGE VR LK +KA + ++ V +LL+LKAQ
Sbjct: 900 EAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQ 941
Score = 32.7 bits (73), Expect = 0.80
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 3 ERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQ 52
E +L + V QGE VR LK +K+ I E V LL LKAQ K+
Sbjct: 822 ESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKE 871
Score = 30.8 bits (68), Expect = 3.0
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 VKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQ 44
V +QG+ VR LK +KA E ++ V +LL LKA+
Sbjct: 757 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAE 790
>gi|27597085 tropomyosin 1 alpha chain isoform 5 [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 386 VERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKN 445
V R I+E LE EE+ +E QV Q +++++ LK + D + E Y++
Sbjct: 165 VARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEE 224
Query: 446 PKLLN--------QLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDL 494
K+L+ + ++ E + L I + E + KL+ EE+D D+
Sbjct: 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 394 EQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQ 453
E+RL EE++ E + + +++L E+ +L + + E L ++ +L Q +
Sbjct: 268 EERLREQEERLHEQEER--LCEQEERLREQEERLCEQEERLREQEERLCEQEERLREQEE 325
Query: 454 -YCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVR---REDLVEEIK 499
CE+ +P G++ L + V KL R+E R RE L+EE++
Sbjct: 326 RLCEQEKLP-----GQERLLEEVEKLLEQERRQEEQERLLERERLLEEVE 370
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 394 EQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQ 453
EQ+ EEK + + LV+ ++KLLEE+ K++ +L ELL K + ++L
Sbjct: 463 EQKERLEEEKAAIQDDRSLVSEEKQKLLEEKEKMLEDLRREQQATELLAAKYKAMESKL- 521
Query: 454 YCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKR 500
+IG + + D + ++ ++++R+++ E+ +R
Sbjct: 522 -----------LIGGRNIMD-----HTNEQQKMLELKRQEIAEQKRR 552
>gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 3.0
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 386 VERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKN 445
V R I+E LE EE+ +E QV Q +++++ LK + D + E Y++
Sbjct: 165 VARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEE 224
Query: 446 PKLLN 450
K+L+
Sbjct: 225 IKVLS 229
>gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 3.0
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 386 VERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKN 445
V R I+E LE EE+ +E QV Q +++++ LK + D + E Y++
Sbjct: 165 VARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEE 224
Query: 446 PKLLN 450
K+L+
Sbjct: 225 IKVLS 229
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.8 bits (68), Expect = 3.0
Identities = 30/143 (20%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 387 ERIFSIVEQRLEALEE--KIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE----- 439
ER + + +++ L+ K+ T+ ++ A A+ +L ER K+ SEL G++++
Sbjct: 302 EREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKIQSEL--DGLQSDNEILK 359
Query: 440 --------LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELK-------------DGVIKL 478
LL +K+ +L+ ++Q +E G + ++ +++L+ + +
Sbjct: 360 AAVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWR 419
Query: 479 RSVTSREEVDVRREDLVEEIKRR 501
+S + E +R + EEI R+
Sbjct: 420 QSEKDQYEEKLRASQMAEEITRK 442
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.8 bits (68), Expect = 3.0
Identities = 30/143 (20%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 387 ERIFSIVEQRLEALEE--KIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE----- 439
ER + + +++ L+ K+ T+ ++ A A+ +L ER K+ SEL G++++
Sbjct: 302 EREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKIQSEL--DGLQSDNEILK 359
Query: 440 --------LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELK-------------DGVIKL 478
LL +K+ +L+ ++Q +E G + ++ +++L+ + +
Sbjct: 360 AAVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWR 419
Query: 479 RSVTSREEVDVRREDLVEEIKRR 501
+S + E +R + EEI R+
Sbjct: 420 QSEKDQYEEKLRASQMAEEITRK 442
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 30.4 bits (67), Expect = 4.0
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 402 EKIRTTETQVLVA-----SAQKKLLEER-----LKLVSELWDAG---------IKAEL-L 441
E++R E QVL A A K L++ L+++ DAG ++ EL L
Sbjct: 999 EELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGL 1058
Query: 442 YKKNPKLLN-QLQYCEEAGIPLVAII-GEQELKDGVIKLRSVTSREEVDVRREDLVEEIK 499
YK + +LL Q + G +VA GEQ+ K+G+++LR S + L
Sbjct: 1059 YKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNS-----AKPSPLASSST 1113
Query: 500 RRTGQPLCIC 509
+ +C+C
Sbjct: 1114 ASSTTSICVC 1123
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 30.4 bits (67), Expect = 4.0
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 402 EKIRTTETQVLVA-----SAQKKLLEER-----LKLVSELWDAG---------IKAEL-L 441
E++R E QVL A A K L++ L+++ DAG ++ EL L
Sbjct: 1066 EELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGL 1125
Query: 442 YKKNPKLLN-QLQYCEEAGIPLVAII-GEQELKDGVIKLRSVTSREEVDVRREDLVEEIK 499
YK + +LL Q + G +VA GEQ+ K+G+++LR S + L
Sbjct: 1126 YKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNS-----AKPSPLASSST 1180
Query: 500 RRTGQPLCIC 509
+ +C+C
Sbjct: 1181 ASSTTSICVC 1190
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 391 SIVEQRLEALEEKIRTTETQVLVASAQKKLLEE-----RLKLVSELWDAGIKAELLYKKN 445
S ++QR ++ E TT+T V + +++++EE R +L EL KA+ +K
Sbjct: 311 SKIKQRADSKESLKATTKTAVSKLAKREEVVEEGAKEARSELAKELAKTEKKAKESSEKP 370
Query: 446 P-KLLNQLQYCEEAGIPLVA--------IIGEQELKDGVIKLRSVTSREEVDVRREDLVE 496
P K + E+ L A +G++ LK+ + KL +E+ ++++E +
Sbjct: 371 PEKPAKPERVKTESSEALKAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKKEIKKER--K 428
Query: 497 EIKRRTGQ 504
E+K+ G+
Sbjct: 429 ELKKDEGR 436
Score = 29.3 bits (64), Expect = 8.9
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 393 VEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQL 452
+EQ ++ALEE +T E Q+ L++E D K ++L +K+P+ + +
Sbjct: 1565 LEQNIQALEENHQTQE--------QESLVQE---------DKTRKPKMLEEKSPEKVKAM 1607
Query: 453 QYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEE 497
+ EA + +G L++ +++ +EE R +D+V+E
Sbjct: 1608 EEKLEALLEKTKALG---LEESLVQEGRAREQEEKYWRGQDVVQE 1649
>gi|221316556 ATP-binding cassette, sub-family C, member 3 isoform 2
[Homo sapiens]
Length = 572
Score = 30.0 bits (66), Expect = 5.2
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 417 QKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLV 463
Q KL + R+KL+SE+ + GIK LY P L Q++ + + L+
Sbjct: 480 QMKLKDSRIKLMSEILN-GIKVLKLYAWEPSFLKQVEGIRQGELQLL 525
>gi|9955970 ATP-binding cassette, sub-family C, member 3 isoform 1
[Homo sapiens]
Length = 1527
Score = 30.0 bits (66), Expect = 5.2
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 417 QKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLV 463
Q KL + R+KL+SE+ + GIK LY P L Q++ + + L+
Sbjct: 480 QMKLKDSRIKLMSEILN-GIKVLKLYAWEPSFLKQVEGIRQGELQLL 525
>gi|63252904 tropomyosin 1 alpha chain isoform 6 [Homo sapiens]
Length = 245
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 387 ERIFSIVEQRLEALEEKIRTTETQV-----LVASAQKKLLEERLKLV---SELWDAGIKA 438
ER ++E R + EEK+ E Q+ + A +K E KLV S+L A +A
Sbjct: 88 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 147
Query: 439 ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEE 497
EL K +L E+ELK L+S+ ++ E ++ED EE
Sbjct: 148 ELSEGKCAEL-------------------EEELKTVTNNLKSLEAQAEKYSQKEDRYEE 187
>gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 387 ERIFSIVEQRLEALEEKIRTTETQV-----LVASAQKKLLEERLKLV---SELWDAGIKA 438
ER ++E R + EEK+ E Q+ + A +K E KLV S+L A +A
Sbjct: 124 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183
Query: 439 ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEE 497
EL K +L E+ELK L+S+ ++ E ++ED EE
Sbjct: 184 ELSEGKCAEL-------------------EEELKTVTNNLKSLEAQAEKYSQKEDRYEE 223
>gi|63252898 tropomyosin 1 alpha chain isoform 1 [Homo sapiens]
Length = 284
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 387 ERIFSIVEQRLEALEEKIRTTETQV-----LVASAQKKLLEERLKLV---SELWDAGIKA 438
ER ++E R + EEK+ E Q+ + A +K E KLV S+L A +A
Sbjct: 124 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183
Query: 439 ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEE 497
EL K +L E+ELK L+S+ ++ E ++ED EE
Sbjct: 184 ELSEGKCAEL-------------------EEELKTVTNNLKSLEAQAEKYSQKEDRYEE 223
>gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 387 ERIFSIVEQRLEALEEKIRTTETQV-----LVASAQKKLLEERLKLV---SELWDAGIKA 438
ER ++E R + EEK+ E Q+ + A +K E KLV S+L A +A
Sbjct: 124 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183
Query: 439 ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEE 497
EL K +L E+ELK L+S+ ++ E ++ED EE
Sbjct: 184 ELSEGKCAEL-------------------EEELKTVTNNLKSLEAQAEKYSQKEDRYEE 223
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 29.6 bits (65), Expect = 6.8
Identities = 25/115 (21%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 394 EQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSE-LWDAGIK----AELLYKKNPKL 448
E++++ EEKI+ E ++ + + EE+++ E +W+ K E++++K K+
Sbjct: 306 EEKIQEWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKM 365
Query: 449 --LNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 501
L ++ + +E I +EL++ + + + +EE E + E+ KR+
Sbjct: 366 RRLEEMMWEKEEKI--------RELEEKMHEQEKIREQEEKRQEEEKIREQEKRQ 412
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 29.6 bits (65), Expect = 6.8
Identities = 23/114 (20%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 386 VERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKN 445
VE E++++ EEKI+ E ++ + E+ LK ++W+ + E ++++
Sbjct: 453 VEEKMQEEEEKMQEQEEKIQRQEEKIQEQEEKTWRQEKLLKQEEKIWE---QEEKMWRQE 509
Query: 446 PKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKL-RSVTSREEVDVRREDLVEEI 498
K+ Q + +E + E+++++ ++L + +E +VR ++L E +
Sbjct: 510 EKMWEQEEKMQEQEEKMQR--QEEKMREQEVRLWQQEEKMQEQEVRLQELEERL 561
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,632,398
Number of Sequences: 37866
Number of extensions: 766931
Number of successful extensions: 2689
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2625
Number of HSP's gapped (non-prelim): 97
length of query: 509
length of database: 18,247,518
effective HSP length: 107
effective length of query: 402
effective length of database: 14,195,856
effective search space: 5706734112
effective search space used: 5706734112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.