Guide to the Human Genome
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Name: LRRFIP2 Sequence: fasta or formatted (424aa) NCBI GI: 197276647
Description:

leucine rich repeat (in FLII) interacting protein 2 isoform 3

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [721aa] leucine rich repeat (in FLII) interacting protein 2 isoform 1
alt prot [400aa] leucine rich repeat (in FLII) interacting protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         36           2
 C cysteine            0.5          2           1
 D aspartate           6.1         26           1
 E glutamate          13.7         58           3
 F phenylalanine       0.9          4           1
 G glycine             4.7         20           1
 H histidine           1.2          5           1
 I isoleucine          4.0         17           2
 K lysine              8.7         37           2
 L leucine            10.6         45           2
 M methionine          2.6         11           1
 N asparagine          3.8         16           2
 P proline             2.1          9           1
 Q glutamine           6.6         28           2
 R arginine            8.3         35           2
 S serine              7.5         32           2
 T threonine           4.0         17           2
 V valine              4.0         17           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat (in FLII) interacting protein 2... 
LRRFIP2               0.922   leucine rich repeat (in FLII) interacting protein 2 i...
LRRFIP1               0.489   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.441   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.290   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP2               0.254   leucine rich repeat (in FLII) interacting protein 2 i...
LRRFIP1               0.248   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.226   leucine rich repeat (in FLII) interacting protein 1...
GOLGB1                0.066   golgi autoantigen, golgin subfamily b, macrogolgin ...
CGNL1                 0.053   cingulin-like 1 
MYH3                  0.051   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CROCC                 0.051   ciliary rootlet coiled-coil 
NUMA1                 0.050   nuclear mitotic apparatus protein 1 
MYH7                  0.046   myosin, heavy chain 7, cardiac muscle, beta 
MYH9                  0.046   myosin, heavy polypeptide 9, non-muscle 
MYH6                  0.044   myosin heavy chain 6 
MYH8                  0.044   myosin, heavy chain 8, skeletal muscle, perinatal [...
PLEC1                 0.044   plectin 1 isoform 11 
PLEC1                 0.044   plectin 1 isoform 10 
PLEC1                 0.044   plectin 1 isoform 8 
PLEC1                 0.044   plectin 1 isoform 7 
PLEC1                 0.044   plectin 1 isoform 6 
PLEC1                 0.044   plectin 1 isoform 3 
PLEC1                 0.044   plectin 1 isoform 2 
PLEC1                 0.044   plectin 1 isoform 1 
MYH1                  0.044   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.044   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.044   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ROCK1                 0.043   Rho-associated, coiled-coil containing protein kinase...
MYH10                 0.043   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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