Guide to the Human Genome
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Name: TPM1 Sequence: fasta or formatted (284aa) NCBI GI: 63252896
Description:

tropomyosin 1 alpha chain isoform 3

Referenced in:

Muscle

Other entries for this name:
alt prot [284aa] tropomyosin 1 alpha chain isoform 5
alt prot [284aa] tropomyosin 1 alpha chain isoform 1
alt prot [284aa] tropomyosin 1 alpha chain isoform 4
alt prot [284aa] tropomyosin 1 alpha chain isoform 2
alt prot [245aa] tropomyosin 1 alpha chain isoform 6
alt prot [284aa] tropomyosin 1 alpha chain isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         35           2
 C cysteine            0.4          1           1
 D aspartate           7.7         22           2
 E glutamate          20.1         57           3
 F phenylalanine       0.4          1           1
 G glycine             1.1          3           1
 H histidine           1.1          3           1
 I isoleucine          3.5         10           2
 K lysine             13.0         37           3
 L leucine            12.0         34           2
 M methionine          2.8          8           1
 N asparagine          2.5          7           2
 P proline             0.0          0           0
 Q glutamine           5.3         15           1
 R arginine            5.3         15           2
 S serine              4.9         14           1
 T threonine           2.8          8           1
 V valine              3.5         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tropomyosin 1 alpha chain isoform 3 
TPM1                  0.941   tropomyosin 1 alpha chain isoform 4 
TPM1                  0.909   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.897   tropomyosin 1 alpha chain isoform 2 
TPM4                  0.868   tropomyosin 4 isoform 1 
TPM1                  0.852   tropomyosin 1 alpha chain isoform 5 
TPM1                  0.838   tropomyosin 1 alpha chain isoform 7 
TPM3                  0.836   tropomyosin 3 isoform 1 
TPM2                  0.826   tropomyosin 2 (beta) isoform 2 
TPM2                  0.807   tropomyosin 2 (beta) isoform 1 
TPM1                  0.637   tropomyosin 1 alpha chain isoform 6 
TPM3                  0.629   tropomyosin 3 isoform 4 
TPM4                  0.629   tropomyosin 4 isoform 2 
TPM3                  0.590   tropomyosin 3 isoform 5 
TPM3                  0.588   tropomyosin 3 isoform 2 
TPM3                  0.548   tropomyosin 3 isoform 3 
TPM2                  0.487   tropomyosin 2 (beta) isoform 3 
LOC400352             0.124   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.124   PREDICTED: similar to Putative golgin subfamily A m...
MYH9                  0.116   myosin, heavy polypeptide 9, non-muscle 
LOC645202             0.116   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.116   PREDICTED: Putative golgin subfamily A member 6-lik...
SMC1A                 0.108   structural maintenance of chromosomes 1A 
ERC1                  0.108   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.108   RAB6-interacting protein 2 isoform delta 
LOC727832             0.108   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.108   golgi autoantigen, golgin subfamily a-like 
MYH10                 0.103   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.103   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.103   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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