Guide to the Human Genome
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Name: TPM1 Sequence: fasta or formatted (245aa) NCBI GI: 63252904
Description:

tropomyosin 1 alpha chain isoform 6

Referenced in:

Muscle

Other entries for this name:
alt prot [284aa] tropomyosin 1 alpha chain isoform 5
alt prot [284aa] tropomyosin 1 alpha chain isoform 3
alt prot [284aa] tropomyosin 1 alpha chain isoform 1
alt prot [284aa] tropomyosin 1 alpha chain isoform 4
alt prot [284aa] tropomyosin 1 alpha chain isoform 2
alt prot [284aa] tropomyosin 1 alpha chain isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         29           2
 C cysteine            0.4          1           1
 D aspartate           6.1         15           2
 E glutamate          20.8         51           3
 F phenylalanine       0.4          1           1
 G glycine             1.6          4           1
 H histidine           0.8          2           1
 I isoleucine          4.1         10           2
 K lysine              9.0         22           1
 L leucine            11.8         29           1
 M methionine          1.2          3           1
 N asparagine          2.4          6           2
 P proline             0.0          0           0
 Q glutamine           6.1         15           2
 R arginine            9.0         22           2
 S serine              5.7         14           3
 T threonine           3.3          8           1
 V valine              3.7          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tropomyosin 1 alpha chain isoform 6 
TPM3                  0.834   tropomyosin 3 isoform 5 
TPM3                  0.785   tropomyosin 3 isoform 4 
TPM3                  0.785   tropomyosin 3 isoform 3 
TPM4                  0.781   tropomyosin 4 isoform 2 
TPM1                  0.769   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.746   tropomyosin 1 alpha chain isoform 3 
TPM3                  0.737   tropomyosin 3 isoform 2 
TPM1                  0.725   tropomyosin 1 alpha chain isoform 2 
TPM3                  0.721   tropomyosin 3 isoform 1 
TPM1                  0.700   tropomyosin 1 alpha chain isoform 5 
TPM2                  0.697   tropomyosin 2 (beta) isoform 1 
TPM4                  0.684   tropomyosin 4 isoform 1 
TPM1                  0.674   tropomyosin 1 alpha chain isoform 4 
TPM1                  0.654   tropomyosin 1 alpha chain isoform 7 
TPM2                  0.630   tropomyosin 2 (beta) isoform 2 
TPM2                  0.494   tropomyosin 2 (beta) isoform 3 
LOC645202             0.120   PREDICTED: hypothetical protein LOC645202 
DEF6                  0.113   differentially expressed in FDCP 6 homolog 
LOC400352             0.109   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.109   PREDICTED: similar to Putative golgin subfamily A m...
NUMA1                 0.109   nuclear mitotic apparatus protein 1 
LOC727832             0.104   golgi autoantigen, golgin subfamily a-like 
MYH9                  0.102   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.102   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.102   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.102   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.102   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
SMC2                  0.102   structural maintenance of chromosomes 2 
SMC2                  0.102   structural maintenance of chromosomes 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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