KDM5C 15383

Name: KDM5C	Sequence: fasta or formatted (1379aa)		NCBI GI: 226442963
Description: jumonji, AT rich interactive domain 1C isoform 2		Referenced in: Histones, Related Proteins, and Modifying Enzymes PHD Finger Proteins
Other entries for this name: alt prot [1560aa] jumonji, AT rich interactive domain 1C isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 111 3 C cysteine 3.5 48 1 D aspartate 4.6 63 2 E glutamate 10.1 139 4 F phenylalanine 2.7 37 1 G glycine 5.4 75 2 H histidine 2.2 30 1 I isoleucine 3.1 43 2 K lysine 5.1 71 2 L leucine 12.0 165 3 M methionine 2.2 31 2 N asparagine 2.8 38 2 P proline 7.3 101 3 Q glutamine 4.0 55 2 R arginine 6.6 91 2 S serine 6.7 92 3 T threonine 3.7 51 2 V valine 5.8 80 3 W tryptophan 1.7 24 2 Y tyrosine 2.5 34 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jumonji, AT rich interactive domain 1C isoform 2 [H... KDM5C 0.935 jumonji, AT rich interactive domain 1C isoform 1 [H... KDM5D 0.824 jumonji, AT rich interactive domain 1D isoform 2 [Ho... KDM5D 0.818 jumonji, AT rich interactive domain 1D isoform 1 [H... KDM5D 0.816 jumonji, AT rich interactive domain 1D isoform 3 [H... KDM5A 0.460 retinoblastoma binding protein 2 isoform 1 KDM5A 0.460 retinoblastoma binding protein 2 isoform 2 KDM5B 0.404 jumonji, AT rich interactive domain 1B LOC100133760 0.334 PREDICTED: similar to Jumonji, AT rich interactive ... JARID2 0.043 jumonji, AT rich interactive domain 2 protein LOC390245 0.042 PREDICTED: hypothetical protein LOC390245 0.042 PREDICTED: hypothetical protein LOC390245 0.042 PREDICTED: hypothetical protein KDM4D 0.042 jumonji domain containing 2D KDM4C 0.040 jumonji domain containing 2C isoform 3 LOC100129053 0.040 PREDICTED: hypothetical protein LOC100129053 0.040 PREDICTED: hypothetical protein LOC100129053 0.040 PREDICTED: hypothetical protein KDM4C 0.040 jumonji domain containing 2C isoform 4 KDM4C 0.040 jumonji domain containing 2C isoform 2 KDM4C 0.040 jumonji domain containing 2C isoform 1 KDM4A 0.040 jumonji domain containing 2A KDM4B 0.038 jumonji domain containing 2B BAZ1B 0.017 bromodomain adjacent to zinc finger domain, 1B [Homo... CHD4 0.016 chromodomain helicase DNA binding protein 4 PHRF1 0.016 PHD and ring finger domains 1 MLL2 0.015 myeloid/lymphoid or mixed-lineage leukemia 2 DPF1 0.015 D4, zinc and double PHD fingers family 1 isoform c ... DPF1 0.015 D4, zinc and double PHD fingers family 1 isoform a ... MLL3 0.014 myeloid/lymphoid or mixed-lineage leukemia 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.