Guide to the Human Genome
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Name: LRRFIP2 Sequence: fasta or formatted (721aa) NCBI GI: 5453726
Description:

leucine rich repeat (in FLII) interacting protein 2 isoform 1

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [424aa] leucine rich repeat (in FLII) interacting protein 2 isoform 3
alt prot [400aa] leucine rich repeat (in FLII) interacting protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         52           2
 C cysteine            0.6          4           1
 D aspartate           6.7         48           2
 E glutamate          10.3         74           3
 F phenylalanine       1.4         10           1
 G glycine             4.7         34           2
 H histidine           2.1         15           2
 I isoleucine          3.6         26           2
 K lysine              7.5         54           2
 L leucine             9.8         71           2
 M methionine          2.2         16           1
 N asparagine          3.3         24           2
 P proline             2.5         18           1
 Q glutamine           5.3         38           2
 R arginine            8.9         64           2
 S serine             12.1         87           3
 T threonine           4.0         29           2
 V valine              3.7         27           2
 W tryptophan          0.4          3           1
 Y tyrosine            3.7         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat (in FLII) interacting protein 2 i... 
LRRFIP1               0.393   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP2               0.347   leucine rich repeat (in FLII) interacting protein 2...
LRRFIP2               0.276   leucine rich repeat (in FLII) interacting protein 2 i...
LRRFIP1               0.195   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.132   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.096   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.091   leucine rich repeat (in FLII) interacting protein 1...
MYH10                 0.039   myosin, heavy polypeptide 10, non-muscle 
GOLGA4                0.036   golgi autoantigen, golgin subfamily a, 4 
GOLGA5                0.035   Golgi autoantigen, golgin subfamily a, 5 
ERC2                  0.035   cytomatrix protein p110 
ERC1                  0.034   RAB6-interacting protein 2 isoform delta 
LOC645202             0.034   PREDICTED: hypothetical protein LOC645202 
EEA1                  0.033   early endosome antigen 1, 162kD 
CGNL1                 0.032   cingulin-like 1 
GOLGB1                0.032   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.032   myosin, heavy polypeptide 4, skeletal muscle 
TRIP11                0.032   thyroid hormone receptor interactor 11 
MYO18A                0.031   myosin 18A isoform b 
MYO18A                0.031   myosin 18A isoform a 
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
ERC1                  0.031   RAB6-interacting protein 2 isoform epsilon 
MYH1                  0.031   myosin, heavy chain 1, skeletal muscle, adult [Homo...
C14orf145             0.031   hypothetical protein LOC145508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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