Guide to the Human Genome
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Name: KDM5C Sequence: fasta or formatted (1560aa) NCBI GI: 109255243
Description:

jumonji, AT rich interactive domain 1C isoform 1

Referenced in:

Gene Families
Histones, Related Proteins, and Modifying Enzymes
PHD Finger Proteins

Other entries for this name:
alt prot [1379aa] jumonji, AT rich interactive domain 1C isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        122           3
 C cysteine            3.0         47           1
 D aspartate           4.4         69           2
 E glutamate          10.6        166           4
 F phenylalanine       2.6         40           1
 G glycine             5.7         89           2
 H histidine           2.1         32           1
 I isoleucine          3.1         49           2
 K lysine              5.1         79           2
 L leucine            11.8        184           3
 M methionine          2.0         31           2
 N asparagine          2.8         44           2
 P proline             7.5        117           3
 Q glutamine           4.6         71           3
 R arginine            7.2        113           5
 S serine              6.4        100           3
 T threonine           3.9         61           2
 V valine              5.5         86           3
 W tryptophan          1.6         25           2
 Y tyrosine            2.2         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji, AT rich interactive domain 1C isoform 1 [H... 
KDM5D                 0.838   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.833   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5C                 0.829   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5D                 0.760   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5A                 0.467   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.467   retinoblastoma binding protein 2 isoform 2 
KDM5B                 0.422   jumonji, AT rich interactive domain 1B 
LOC100133760          0.356   PREDICTED: similar to Jumonji, AT rich interactive ...
JARID2                0.038   jumonji, AT rich interactive domain 2 protein 
LOC390245             0.037   PREDICTED: hypothetical protein 
LOC390245             0.037   PREDICTED: hypothetical protein 
LOC390245             0.037   PREDICTED: hypothetical protein 
KDM4D                 0.037   jumonji domain containing 2D 
KDM4C                 0.036   jumonji domain containing 2C isoform 3 
LOC100129053          0.036   PREDICTED: hypothetical protein 
LOC100129053          0.036   PREDICTED: hypothetical protein 
LOC100129053          0.036   PREDICTED: hypothetical protein 
KDM4C                 0.036   jumonji domain containing 2C isoform 4 
KDM4C                 0.036   jumonji domain containing 2C isoform 2 
KDM4C                 0.036   jumonji domain containing 2C isoform 1 
KDM4A                 0.036   jumonji domain containing 2A 
KDM4B                 0.034   jumonji domain containing 2B 
BAZ1B                 0.015   bromodomain adjacent to zinc finger domain, 1B [Homo...
CHD4                  0.014   chromodomain helicase DNA binding protein 4 
PHRF1                 0.014   PHD and ring finger domains 1 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
DPF1                  0.013   D4, zinc and double PHD fingers family 1 isoform c ...
DPF1                  0.013   D4, zinc and double PHD fingers family 1 isoform a ...
MLL3                  0.013   myeloid/lymphoid or mixed-lineage leukemia 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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