Guide to the Human Genome
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Name: ABCC3 Sequence: fasta or formatted (572aa) NCBI GI: 221316556
Description:

ATP-binding cassette, sub-family C, member 3 isoform 2

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [1527aa] ATP-binding cassette, sub-family C, member 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         44           2
 C cysteine            2.4         14           1
 D aspartate           2.3         13           1
 E glutamate           3.5         20           2
 F phenylalanine       6.6         38           2
 G glycine             6.1         35           1
 H histidine           2.3         13           2
 I isoleucine          5.6         32           2
 K lysine              4.9         28           1
 L leucine            15.0         86           2
 M methionine          3.1         18           2
 N asparagine          2.4         14           1
 P proline             5.4         31           2
 Q glutamine           3.8         22           2
 R arginine            4.5         26           1
 S serine              7.2         41           2
 T threonine           4.0         23           4
 V valine              7.0         40           2
 W tryptophan          3.0         17           2
 Y tyrosine            3.0         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 3 isofor... 
ABCC3                 0.950   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC1                 0.495   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.495   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.495   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.495   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.495   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC6                 0.302   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC2                 0.263   ATP-binding cassette, sub-family C (CFTR/MRP), member...
LOC100292715          0.198   PREDICTED: hypothetical protein 
ABCC4                 0.140   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC4                 0.140   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC9                 0.110   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.110   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.110   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC10                0.100   ATP-binding cassette, sub-family C, member 10 
ABCC8                 0.090   ATP-binding cassette, sub-family C, member 8 
CFTR                  0.081   cystic fibrosis transmembrane conductance regulator ...
ABCC5                 0.068   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC12                0.065   ATP-binding cassette protein C12 
ABCC11                0.053   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.053   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.053   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC6                 0.028   URG7 protein isoform 2 
ABCC5                 0.009   ATP-binding cassette, sub-family C, member 5 isoform...
ABCA7                 0.004   ATP-binding cassette, sub-family A, member 7 
SCN3A                 0.004   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.004   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.004   sodium channel, voltage-gated, type III, alpha isof...
SLC19A1               0.004   solute carrier family 19 member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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