Guide to the Human Genome
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Name: CCDC41 Sequence: fasta or formatted (701aa) NCBI GI: 109134355
Description:

NY-REN-58 antigen

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt mRNA [701aa] NY-REN-58 antigen
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         39           2
 C cysteine            0.4          3           1
 D aspartate           3.3         23           1
 E glutamate          16.3        114           2
 F phenylalanine       2.0         14           1
 G glycine             1.6         11           2
 H histidine           2.6         18           2
 I isoleucine          3.6         25           1
 K lysine             10.6         74           2
 L leucine            13.3         93           3
 M methionine          2.0         14           1
 N asparagine          5.0         35           2
 P proline             2.0         14           2
 Q glutamine           9.0         63           3
 R arginine            7.0         49           2
 S serine              5.6         39           3
 T threonine           3.9         27           2
 V valine              4.7         33           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NY-REN-58 antigen 
CCDC41                1.000   NY-REN-58 antigen 
MYH10                 0.076   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.074   coiled-coil domain containing 88A isoform 1 
CCDC88A               0.074   coiled-coil domain containing 88A isoform 2 
MYH11                 0.070   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.070   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.070   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.070   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH7                  0.069   myosin, heavy chain 7, cardiac muscle, beta 
CENPE                 0.069   centromere protein E 
MYH8                  0.068   myosin, heavy chain 8, skeletal muscle, perinatal [...
CENPF                 0.067   centromere protein F 
TPR                   0.067   nuclear pore complex-associated protein TPR 
CCDC88C               0.067   DVL-binding protein DAPLE 
ROCK2                 0.067   Rho-associated, coiled-coil containing protein kinas...
EEA1                  0.066   early endosome antigen 1, 162kD 
MYH2                  0.066   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.066   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CGNL1                 0.066   cingulin-like 1 
LOC727832             0.065   golgi autoantigen, golgin subfamily a-like 
MYH3                  0.065   myosin, heavy chain 3, skeletal muscle, embryonic [H...
TCHH                  0.064   trichohyalin 
LOC283767             0.063   golgi autoantigen, golgin subfamily a-like 
PLEC1                 0.063   plectin 1 isoform 11 
PLEC1                 0.063   plectin 1 isoform 10 
PLEC1                 0.063   plectin 1 isoform 8 
PLEC1                 0.063   plectin 1 isoform 7 
PLEC1                 0.063   plectin 1 isoform 6 
PLEC1                 0.063   plectin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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