Guide to the Human Genome
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Name: LOC283767 Sequence: fasta or formatted (668aa) NCBI GI: 222446603
Description:

golgi autoantigen, golgin subfamily a-like

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         25           2
 C cysteine            0.4          3           1
 D aspartate           1.5         10           1
 E glutamate          25.1        168           3
 F phenylalanine       0.1          1           1
 G glycine             1.2          8           2
 H histidine           4.3         29           2
 I isoleucine          4.6         31           1
 K lysine             11.7         78           4
 L leucine             6.6         44           3
 M methionine          5.2         35           2
 N asparagine          1.5         10           2
 P proline             3.1         21           1
 Q glutamine          12.4         83           3
 R arginine            7.8         52           2
 S serine              2.4         16           1
 T threonine           3.4         23           3
 V valine              1.5         10           1
 W tryptophan          2.5         17           1
 Y tyrosine            0.6          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.909   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.906   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC645202             0.712   PREDICTED: hypothetical protein LOC645202 
LOC283685             0.577   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.544   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100132816          0.358   PREDICTED: similar to Putative golgin subfamily A m...
LOC400352             0.357   PREDICTED: similar to Putative golgin subfamily A m...
LOC100133758          0.267   PREDICTED: hypothetical protein, partial 
LOC283685             0.225   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133220          0.178   PREDICTED: hypothetical protein 
TCHH                  0.161   trichohyalin 
GOLGA2                0.157   Golgi autoantigen, golgin subfamily a, 2 
GOLGA6                0.152   golgi autoantigen, golgin subfamily a, 6 
GOLGA6C               0.149   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6D               0.148   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6B               0.147   golgi autoantigen, golgin subfamily a, 6B 
LOC651807             0.144   PREDICTED: hypothetical protein 
LOC647042             0.142   PREDICTED: hypothetical protein isoform 1 
WDR87                 0.119   NYD-SP11 protein 
LOC728636             0.112   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.112   hypothetical protein LOC440295 
LOC647042             0.111   PREDICTED: hypothetical protein isoform 2 
CALD1                 0.094   caldesmon 1 isoform 1 
LOC100286959          0.093   PREDICTED: hypothetical protein XP_002343921 
LOC728080             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.092   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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