Guide to the Human Genome
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Name: KIAA1984 Sequence: fasta or formatted (534aa) NCBI GI: 89886470
Description:

hypothetical protein LOC84960

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         27           2
 C cysteine            1.3          7           1
 D aspartate           5.2         28           1
 E glutamate          10.1         54           4
 F phenylalanine       1.7          9           1
 G glycine             2.4         13           1
 H histidine           1.7          9           1
 I isoleucine          5.1         27           2
 K lysine              8.8         47           5
 L leucine            12.4         66           3
 M methionine          4.5         24           2
 N asparagine          4.3         23           2
 P proline             1.5          8           1
 Q glutamine           6.7         36           2
 R arginine            8.4         45           3
 S serine              6.4         34           2
 T threonine           6.2         33           1
 V valine              5.2         28           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84960 
CCDC151               0.094   coiled-coil domain containing 151 
HOOK1                 0.032   hook homolog 1 
CEP135                0.031   centrosome protein 4 
CCDC88A               0.030   coiled-coil domain containing 88A isoform 2 
CENPE                 0.030   centromere protein E 
CLIP1                 0.030   restin isoform b 
CLIP1                 0.030   restin isoform a 
RB1CC1                0.029   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.029   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
EEA1                  0.029   early endosome antigen 1, 162kD 
CEP250                0.028   centrosomal protein 2 
CCDC88A               0.027   coiled-coil domain containing 88A isoform 1 
ANKRD20A4             0.027   ankyrin repeat domain 20 family, member A4 
KIAA1598              0.026   shootin1 isoform a 
KIAA1598              0.026   shootin1 isoform b 
KIF20B                0.026   M-phase phosphoprotein 1 
MYH1                  0.025   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CGNL1                 0.025   cingulin-like 1 
GCC2                  0.024   GRIP and coiled-coil domain-containing 2 
ANKRD20A1             0.024   ankyrin repeat domain 20 family, member A1 
RABEP1                0.024   rabaptin, RAB GTPase binding effector protein 1 isof...
MYH4                  0.024   myosin, heavy polypeptide 4, skeletal muscle 
DST                   0.023   dystonin isoform 1e precursor 
ANKRD20A2             0.023   ankyrin repeat domain 20 family, member A2 
MYH8                  0.023   myosin, heavy chain 8, skeletal muscle, perinatal [...
KIF5B                 0.023   kinesin family member 5B 
KTN1                  0.022   kinectin 1 isoform b 
KTN1                  0.022   kinectin 1 isoform a 
KTN1                  0.022   kinectin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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