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Search of human proteins with 62526120
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62526120 glycolipid transfer protein domain containing 2
[Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62526120 glycolipid transfer protein domain containing 2 [Hom... 590 e-169
gi|71274150 glycolipid transfer protein domain containing 1 [Hom... 124 1e-28
gi|7705987 glycolipid transfer protein [Homo sapiens] 37 0.016
gi|7705684 pleckstrin homology domain containing, family A (phos... 34 0.13
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 33 0.23
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 33 0.23
gi|239757282 PREDICTED: similar to Fc fragment of IgG binding pr... 33 0.23
gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo ... 33 0.23
gi|154146262 Fc fragment of IgG binding protein [Homo sapiens] 33 0.23
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 32 0.86
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ... 32 0.86
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 32 0.86
gi|4885433 mitogen-activated protein kinase 8 interacting protei... 31 1.1
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 31 1.5
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens] 30 2.5
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ... 30 2.5
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ... 30 2.5
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens] 30 2.5
gi|19115964 phospholipase C delta 3 [Homo sapiens] 29 4.3
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 29 4.3
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 29 4.3
gi|239757757 PREDICTED: similar to PRO2325 [Homo sapiens] 28 7.3
gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo ... 28 7.3
gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo ... 28 7.3
gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo ... 28 7.3
gi|213513324 hypothetical protein LOC401115 [Homo sapiens] 28 9.5
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 28 9.5
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 28 9.5
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 28 9.5
gi|169167163 PREDICTED: hypothetical protein [Homo sapiens] 28 9.5
>gi|62526120 glycolipid transfer protein domain containing 2 [Homo
sapiens]
Length = 291
Score = 590 bits (1522), Expect = e-169
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MGVAARPPALRHWFSHSIPLAIFALLLLYLSVRSLGARSGCGPRAQPCVPGETAPFQVRQ 60
MGVAARPPALRHWFSHSIPLAIFALLLLYLSVRSLGARSGCGPRAQPCVPGETAPFQVRQ
Sbjct: 1 MGVAARPPALRHWFSHSIPLAIFALLLLYLSVRSLGARSGCGPRAQPCVPGETAPFQVRQ 60
Query: 61 ESGTLEAPERKQPPCLGPRGMLGRMMRRFHASLKPEGDVGLSPYLAGWRALVEFLTPLGS 120
ESGTLEAPERKQPPCLGPRGMLGRMMRRFHASLKPEGDVGLSPYLAGWRALVEFLTPLGS
Sbjct: 61 ESGTLEAPERKQPPCLGPRGMLGRMMRRFHASLKPEGDVGLSPYLAGWRALVEFLTPLGS 120
Query: 121 VFAFATREAFTKVTDLEARVHGPDAEHYWSLAAMAAWERRAGLLEQPGAAPRDPTRSSGS 180
VFAFATREAFTKVTDLEARVHGPDAEHYWSLAAMAAWERRAGLLEQPGAAPRDPTRSSGS
Sbjct: 121 VFAFATREAFTKVTDLEARVHGPDAEHYWSLAAMAAWERRAGLLEQPGAAPRDPTRSSGS 180
Query: 181 RTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAYRAALGPHHPWLVRQTARLAFLA 240
RTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAYRAALGPHHPWLVRQTARLAFLA
Sbjct: 181 RTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAYRAALGPHHPWLVRQTARLAFLA 240
Query: 241 FPGRRRLLELACPGATEAEARAALLRAAGTLEDVYNRTQSLLAERGLLQLA 291
FPGRRRLLELACPGATEAEARAALLRAAGTLEDVYNRTQSLLAERGLLQLA
Sbjct: 241 FPGRRRLLELACPGATEAEARAALLRAAGTLEDVYNRTQSLLAERGLLQLA 291
>gi|71274150 glycolipid transfer protein domain containing 1 [Homo
sapiens]
Length = 214
Score = 124 bits (311), Expect = 1e-28
Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 5/202 (2%)
Query: 89 FHASLKPEGDVGLSPYLAGWRALVEFLTPLGSVFAFATREAFTKVTDLEARVHGPDAEHY 148
F L + +V L PY+A W+ LV FL LG++F+F +++ +K+ +E GP +EHY
Sbjct: 17 FKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLRGGPQSEHY 76
Query: 149 WSLAAMAAWERRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGP 208
SL AM A E L++ R SG RT+L LHRAL W QL L + T
Sbjct: 77 RSLQAMVAHELSNRLVD---LERRSHHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDAR 133
Query: 209 EAGVQCSDAYRAALGPHHPWLVRQTARLAFLAFPGRRRLLELACPGATEAEARAALLRAA 268
+ + C+D+Y A+L +HPW+VR+ +AF P R LE G E +A L A
Sbjct: 134 TSAL-CADSYNASLAAYHPWVVRRAVTVAFCTLPTREVFLEAMNVGPPE-QAVQMLGEAL 191
Query: 269 GTLEDVYNRTQSLLAERGLLQL 290
++ VYN +Q L AE LL L
Sbjct: 192 PFIQRVYNVSQKLYAEHSLLDL 213
>gi|7705987 glycolipid transfer protein [Homo sapiens]
Length = 209
Score = 37.4 bits (85), Expect = 0.016
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 19/202 (9%)
Query: 93 LKPEGDVGLSPYLAGWRALVEFLTPLGS-VFAFATREAFTKVTDLEARVHGPDAEHYWSL 151
L + + P+L L F LGS VF + +T ++A V+ + + +L
Sbjct: 12 LPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKA-VYDTNPAKFRTL 70
Query: 152 AAMAAWERRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGPEAG 211
+ E+ E P + + L+ L R LR+ Q+ L + G
Sbjct: 71 QNILEVEKEMYGAEWP--------KVGATLALMWLKRGLRFIQVFLQSICDGERDENHPN 122
Query: 212 ---VQCSDAYRAALGPHHPWLVRQTARLAFLAFPGRRRLLELACPG--ATEAEA----RA 262
V + AY AL +H W+V++ + A A P + L+ G TE E R
Sbjct: 123 LIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRL 182
Query: 263 ALLRAAGTLEDVYNRTQSLLAE 284
L+ T++ +Y + AE
Sbjct: 183 FLVNYTATIDVIYEMYTQMNAE 204
>gi|7705684 pleckstrin homology domain containing, family A
(phosphoinositide binding specific) member 9 [Homo
sapiens]
Length = 391
Score = 34.3 bits (77), Expect = 0.13
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 93 LKPEGDVGLSPYLAGWRALVEFLTPLG-SVFAFATREAFTKVTDLEARVHGPDAEHYWSL 151
L + + +LA A+V L LG +VFA + + + + + + E + +L
Sbjct: 208 LLEDSGIPTEAFLASCCAVVPVLDKLGPTVFAPVKMDLVENIKKVNQK-YITNKEEFTTL 266
Query: 152 AAMAAWERRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGPEAG 211
+ E A + + R+S + LL L R L++ + L V G +
Sbjct: 267 QKIVLHEVEADVAQ---------VRNSATEALLWLKRGLKFLKGFLTEVKNGE---KDIQ 314
Query: 212 VQCSDAYRAALGPHHPWLVRQTARLAFLAFP 242
++AY L HH W+VR LA A P
Sbjct: 315 TALNNAYGKTLRQHHGWVVRGVFALALRATP 345
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 34 SLGARSGCGPRAQPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLG 83
SLG+ GP+ P +PG+T P + E G L P RK P GP G+ G
Sbjct: 87 SLGSPGPPGPQGPPGLPGKTGP---KGEKGELGRPGRKGRP--GPPGVPG 131
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 34 SLGARSGCGPRAQPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLG 83
SLG+ GP+ P +PG+T P + E G L P RK P GP G+ G
Sbjct: 97 SLGSPGPPGPQGPPGLPGKTGP---KGEKGELGRPGRKGRP--GPPGVPG 141
>gi|239757282 PREDICTED: similar to Fc fragment of IgG binding protein
[Homo sapiens]
Length = 1403
Score = 33.5 bits (75), Expect = 0.23
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 34 SLGARSGCGPRAQP-CVPGETAPFQVRQESGTLEAPERKQPPC 75
S G GCGP+ P C+ ETAP++ + G L P+ C
Sbjct: 1021 SKGCGEGCGPQGCPVCLAEETAPYESNEACGQLRNPQGPFATC 1063
>gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo
sapiens]
Length = 3003
Score = 33.5 bits (75), Expect = 0.23
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 34 SLGARSGCGPRAQP-CVPGETAPFQVRQESGTLEAPERKQPPC 75
S G GCGP+ P C+ ETAP++ + G L P+ C
Sbjct: 2621 SKGCGEGCGPQGCPVCLAEETAPYESNEACGQLRNPQGPFATC 2663
>gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]
Length = 5405
Score = 33.5 bits (75), Expect = 0.23
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 34 SLGARSGCGPRAQP-CVPGETAPFQVRQESGTLEAPERKQPPC 75
S G GCGP+ P C+ ETAP++ + G L P+ C
Sbjct: 5021 SKGCGEGCGPQGCPVCLAEETAPYESNEACGQLRNPQGPFATC 5063
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 31.6 bits (70), Expect = 0.86
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 159 RRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAY 218
RR G +PG AP+ R G L++LH A + P G S
Sbjct: 231 RRDG--RRPGLAPQ---RGRGGLLLVVLHAA--------------TVQRPRLGRGPSRPP 271
Query: 219 RAALGPHHPWLVRQT--ARLAFLAFPGRRRLLELACPGATEAEARAAL 264
R +G P + ++ AR+ + PG RRL +CP A + A L
Sbjct: 272 RGPVGVCRPQVAQRQRLARVCVRSLPGNRRLATRSCPAAFPLQGGATL 319
>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
sapiens]
Length = 336
Score = 31.6 bits (70), Expect = 0.86
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 159 RRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAY 218
RR G +PG AP+ R G L++LH A + P G S
Sbjct: 178 RRDG--RRPGLAPQ---RGRGGLLLVVLHAA--------------TVQRPRLGRGPSRQP 218
Query: 219 RAALGPHHPWLVRQT--ARLAFLAFPGRRRLLELACPGATEAEARAAL 264
R +G P + ++ AR+ + PG RRL +CP A + A L
Sbjct: 219 RGPVGVCRPQVAQRQRLARVCVRSLPGNRRLATRSCPAAFPLQGGATL 266
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 31.6 bits (70), Expect = 0.86
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 159 RRAGLLEQPGAAPRDPTRSSGSRTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAY 218
RR G +PG AP+ R G L++LH A + P G S
Sbjct: 201 RRDG--RRPGLAPQ---RGRGGLLLVVLHAA--------------TVQRPRLGRGPSRPP 241
Query: 219 RAALGPHHPWLVRQT--ARLAFLAFPGRRRLLELACPGATEAEARAAL 264
R +G P + ++ AR+ + PG RRL +CP A + A L
Sbjct: 242 RGPVGVCRPQVAQRQRLARVCVRSLPGNRRLATRSCPAAFPLQGGATL 289
>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
[Homo sapiens]
Length = 711
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 43 PRAQPCVPGETAPFQVRQESG--TLEAPERKQPPCLGPRGMLGRMMRRFHASLKPE 96
P A P G P +E G L +PER +PP G RG LG ASL +
Sbjct: 315 PAAYPSTAGRPHPSISEEEEGFDCLSSPERAEPPGGGWRGSLGEPPPPPRASLSSD 370
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 36 GARSGCGPRAQPCVPGETAPFQVRQE----SGTLEAPERKQPP----------CLGPRGM 81
G R+G G R + ++ P V Q G L+AP +K+ P GP GM
Sbjct: 80 GHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKRTPRRGEQQGWNDSRGPEGM 139
Query: 82 LGRMMRRFHASLKP 95
L R RR + +P
Sbjct: 140 LERAERRSYREYRP 153
>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 2.5
Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 46 QPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLGRMMRRFHASLKPEGDVGLSPYL 105
Q C+ P RQE GT EA GP G GR H D+ P
Sbjct: 160 QTCLASSLRPQVARQEGGTKEA---------GPGGAGGRSSTGLHWQHYLLVDLVSGP-- 208
Query: 106 AGWRALVEFLTPLGSVFAFATREAFTKVTDLEARVHGPD 144
W + P G + TR F K+ +EA H P+
Sbjct: 209 --WVLFLSPTCPPGPAWGADTRIPFEKL--MEAVAHSPE 243
>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
sapiens]
Length = 537
Score = 30.0 bits (66), Expect = 2.5
Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 46 QPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLGRMMRRFHASLKPEGDVGLSPYL 105
Q C+ P RQE GT EA GP G GR H D+ P
Sbjct: 160 QTCLASSLRPQVARQEGGTKEA---------GPGGAGGRSSTGLHWQHYLLVDLVSGP-- 208
Query: 106 AGWRALVEFLTPLGSVFAFATREAFTKVTDLEARVHGPD 144
W + P G + TR F K+ +EA H P+
Sbjct: 209 --WVLFLSPTCPPGPAWGADTRIPFEKL--MEAVAHSPE 243
>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
sapiens]
Length = 537
Score = 30.0 bits (66), Expect = 2.5
Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 46 QPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLGRMMRRFHASLKPEGDVGLSPYL 105
Q C+ P RQE GT EA GP G GR H D+ P
Sbjct: 160 QTCLASSLRPQVARQEGGTKEA---------GPGGAGGRSSTGLHWQHYLLVDLVSGP-- 208
Query: 106 AGWRALVEFLTPLGSVFAFATREAFTKVTDLEARVHGPD 144
W + P G + TR F K+ +EA H P+
Sbjct: 209 --WVLFLSPTCPPGPAWGADTRIPFEKL--MEAVAHSPE 243
>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]
Length = 712
Score = 30.0 bits (66), Expect = 2.5
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 63 GTLEAPERKQPPCLGPRGMLGRMMRRF-HASLKPEGDVGLSPYLAGWRALVEFLTPLGSV 121
G L E + PC P L ++ A+ D G+ P W AL E G
Sbjct: 17 GWLAPREARGAPCSSPGPSLSSVLNELPSAATLRYRDPGVLP----WGALEEEEEDGGR- 71
Query: 122 FAFATREAFTKVTDLEARVHGPDAEHYWSLAAMAAWERRAGLLEQ 166
+R+AFT+VT E + P E W + A A +R +Q
Sbjct: 72 ----SRKAFTEVTQTELQDPHPSRELPWPMQARRAHRQRNASRDQ 112
>gi|19115964 phospholipase C delta 3 [Homo sapiens]
Length = 789
Score = 29.3 bits (64), Expect = 4.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 234 ARLAFLAFPGRRRLLELACPGATEAE 259
AR +AF GRR+ L+LA P A EA+
Sbjct: 136 ARCLTIAFKGRRKNLDLAAPTAEEAQ 161
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 42 GPRAQPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLG 83
GP+ +P +PG R E+G ER +P GP+G G
Sbjct: 347 GPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKGKQG 388
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 42 GPRAQPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLG 83
GP+ +P +PG R E+G ER +P GP+G G
Sbjct: 347 GPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKGKQG 388
>gi|239757757 PREDICTED: similar to PRO2325 [Homo sapiens]
Length = 171
Score = 28.5 bits (62), Expect = 7.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 38 RSGC-GPRAQPCVPGETAPFQVRQESGTLEAPERKQPPCLGPRGMLGRMM 86
RSG GP A P +P E V + G E P + P LG + G+ +
Sbjct: 91 RSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQLSGKRL 140
>gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo
sapiens]
Length = 277
Score = 28.5 bits (62), Expect = 7.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 43 PRA--QPCVPGETAPFQVR-QESGTLEAPERKQPPCLG----------PRGMLGRMMRRF 89
PRA Q +P A Q+R +++G +P+R P LG PR GR +F
Sbjct: 22 PRASSQTRIPTPGASPQLRPRQAGLALSPQRAASPRLGKAAGPSRNSSPRAFRGRGSPKF 81
Query: 90 HASLKPEGDVGLSPYLAGWRA 110
+++ + G P+ + W +
Sbjct: 82 AGAVRESAEDGEGPFSSPWNS 102
>gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo
sapiens]
Length = 277
Score = 28.5 bits (62), Expect = 7.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 43 PRA--QPCVPGETAPFQVR-QESGTLEAPERKQPPCLG----------PRGMLGRMMRRF 89
PRA Q +P A Q+R +++G +P+R P LG PR GR +F
Sbjct: 22 PRASSQTRIPTPGASPQLRPRQAGLALSPQRAASPRLGKAAGPSRNSSPRAFRGRGSPKF 81
Query: 90 HASLKPEGDVGLSPYLAGWRA 110
+++ + G P+ + W +
Sbjct: 82 AGAVRESAEDGEGPFSSPWNS 102
>gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo
sapiens]
Length = 277
Score = 28.5 bits (62), Expect = 7.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 43 PRA--QPCVPGETAPFQVR-QESGTLEAPERKQPPCLG----------PRGMLGRMMRRF 89
PRA Q +P A Q+R +++G +P+R P LG PR GR +F
Sbjct: 22 PRASSQTRIPTPGASPQLRPRQAGLALSPQRAASPRLGKAAGPSRNSSPRAFRGRGSPKF 81
Query: 90 HASLKPEGDVGLSPYLAGWRA 110
+++ + G P+ + W +
Sbjct: 82 AGAVRESAEDGEGPFSSPWNS 102
>gi|213513324 hypothetical protein LOC401115 [Homo sapiens]
Length = 139
Score = 28.1 bits (61), Expect = 9.5
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 5 ARPPALRHWFSHSIPLAIFALLLLYLSVRSLGARSGCGPRAQPCVPGETAP 55
A PPA R S P LLLL LS+ LGAR+ P A VP ++ P
Sbjct: 46 APPPACRSPMSPPPP----PLLLLLLSLALLGARARAEP-AGSAVPAQSRP 91
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 28.1 bits (61), Expect = 9.5
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 36 GARSGCGPRAQPCVPGETAPFQVRQESGTLEAPERK----------QPPCLGPRGMLGRM 85
G GPR +P PG P GT P K P GPRG G
Sbjct: 384 GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG-- 441
Query: 86 MRRFHASLKPEGDVGLSPYLAGWR 109
+ L P+G G P +AG++
Sbjct: 442 PQGATGPLGPKGQTG-EPGIAGFK 464
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 28.1 bits (61), Expect = 9.5
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 36 GARSGCGPRAQPCVPGETAPFQVRQESGTLEAPERK----------QPPCLGPRGMLGRM 85
G GPR +P PG P GT P K P GPRG G
Sbjct: 315 GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG-- 372
Query: 86 MRRFHASLKPEGDVGLSPYLAGWR 109
+ L P+G G P +AG++
Sbjct: 373 PQGATGPLGPKGQTG-EPGIAGFK 395
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 28.1 bits (61), Expect = 9.5
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 178 SGSRTLLLLHRALRWSQLCLHRVATGALGGPEAGVQCSDAYRAALGPHHP--------WL 229
+G+ L + R ++ L RVA ALG A + +DA AA H WL
Sbjct: 118 TGAHADLAVGRGAEVTEEALVRVAGVALGAQLAQLLGADAAAAAAVQHEAHARRTARRWL 177
Query: 230 VRQTARLAFLAFPGR 244
VR AR A + GR
Sbjct: 178 VRAPARPAAVLADGR 192
>gi|169167163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 28.1 bits (61), Expect = 9.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 149 WSLAAMAAWERRAGLLEQPGAAPRDPTRSSGSR----TLLLLHRALR--WSQL 195
W+ A+ +W R +GL +P A P+ P R S R T+L+ R L W +L
Sbjct: 27 WAKRALRSWHRASGLPNRPYAEPQ-PLRQSLCRDPATTILVQQRWLHQSWEKL 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,250,653
Number of Sequences: 37866
Number of extensions: 576796
Number of successful extensions: 1895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 48
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.