Guide to the Human Genome
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Name: GLTPD2 Sequence: fasta or formatted (291aa) NCBI GI: 62526120
Description:

glycolipid transfer protein domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         44           2
 C cysteine            2.1          6           1
 D aspartate           2.1          6           1
 E glutamate           5.8         17           1
 F phenylalanine       3.4         10           1
 G glycine             8.9         26           2
 H histidine           3.1          9           2
 I isoleucine          0.7          2           1
 K lysine              1.0          3           1
 L leucine            15.1         44           4
 M methionine          1.7          5           2
 N asparagine          0.3          1           1
 P proline             7.9         23           2
 Q glutamine           3.4         10           1
 R arginine           11.0         32           3
 S serine              5.5         16           2
 T threonine           4.5         13           1
 V valine              4.5         13           1
 W tryptophan          2.1          6           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycolipid transfer protein domain containing 2 [Hom... 
GLTPD1                0.175   glycolipid transfer protein domain containing 1 [Hom...
GLTP                  0.021   glycolipid transfer protein 
PLEKHA9               0.016   pleckstrin homology domain containing, family A (phos...
COLQ                  0.014   acetylcholinesterase collagen-like tail subunit isof...
COLQ                  0.014   acetylcholinesterase collagen-like tail subunit isof...
LOC100133944          0.014   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100290309          0.014   PREDICTED: hypothetical protein XP_002348012 
FCGBP                 0.014   Fc fragment of IgG binding protein 
LOC100292723          0.012   PREDICTED: hypothetical protein 
LOC100290128          0.012   PREDICTED: hypothetical protein XP_002346712 
LOC100288963          0.012   PREDICTED: hypothetical protein XP_002342546 
MAPK8IP1              0.011   mitogen-activated protein kinase 8 interacting protei...
HABP4                 0.011   hyaluronan binding protein 4 
LOC100131368          0.009   PREDICTED: similar to hCG1783157 
LOC100291521          0.009   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.009   PREDICTED: hypothetical protein XP_002344215 
TMC4                  0.009   transmembrane channel-like 4 isoform 1 
PLCD3                 0.007   phospholipase C delta 3 
COL25A1               0.007   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.007   collagen, type XXV, alpha 1 isoform 2 
LOC100293871          0.005   PREDICTED: similar to PRO2325 
LOC100291868          0.005   PREDICTED: hypothetical protein XP_002345322 
LOC100290196          0.005   PREDICTED: hypothetical protein XP_002347647 
LOC100289429          0.005   PREDICTED: hypothetical protein XP_002342197 
C4orf48               0.005   hypothetical protein LOC401115 
COL2A1                0.005   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.005   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100131774          0.005   PREDICTED: hypothetical protein 
LOC100131276          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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