Guide to the Human Genome
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Name: LOC100131368 Sequence: fasta or formatted (538aa) NCBI GI: 169214772
Description:

PREDICTED: similar to hCG1783157

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         44           2
 C cysteine            2.2         12           1
 D aspartate           3.9         21           2
 E glutamate           6.5         35           2
 F phenylalanine       2.8         15           3
 G glycine            11.3         61           4
 H histidine           3.3         18           1
 I isoleucine          2.0         11           1
 K lysine              4.8         26           3
 L leucine             9.5         51           2
 M methionine          1.7          9           1
 N asparagine          2.8         15           1
 P proline             5.8         31           2
 Q glutamine           4.8         26           2
 R arginine            6.3         34           2
 S serine              9.7         52           2
 T threonine           4.6         25           1
 V valine              5.8         31           2
 W tryptophan          2.0         11           1
 Y tyrosine            1.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1783157 
LOC100289308          0.990   PREDICTED: hypothetical protein XP_002344215 
LOC100291521          0.987   PREDICTED: hypothetical protein XP_002348052 
CST9                  0.027   cystatin 9 precursor 
CST2                  0.019   cystatin SA precursor 
CST9L                 0.018   cystatin 9-like precursor 
CST4                  0.016   cystatin S precursor 
CST3                  0.016   cystatin C precursor 
CST1                  0.016   cystatin SN precursor 
CST5                  0.011   cystatin D precursor 
WTIP                  0.009   Wilms tumor 1 interacting protein 
LOC730275             0.009   PREDICTED: hypothetical protein 
LOC730275             0.009   PREDICTED: hypothetical protein 
LOC100131436          0.007   PREDICTED: hypothetical protein 
LOC100131436          0.007   PREDICTED: hypothetical protein 
CUX1                  0.006   cut-like homeobox 1 isoform a 
C2orf27B              0.006   hypothetical protein LOC408029 
C2orf27A              0.006   hypothetical protein LOC29798 
SFRS8                 0.006   splicing factor, arginine/serine-rich 8 
MCTP1                 0.006   multiple C2 domains, transmembrane 1 isoform L [Hom...
LOC100127930          0.006   PREDICTED: hypothetical protein 
TRIO                  0.006   triple functional domain (PTPRF interacting) 
CEP350                0.006   centrosome-associated protein 350 
STAT1                 0.005   signal transducer and activator of transcription 1 is...
STAT1                 0.005   signal transducer and activator of transcription 1 i...
LOC729989             0.005   PREDICTED: hypothetical protein 
LOC729989             0.005   PREDICTED: hypothetical protein 
LOC729989             0.005   PREDICTED: hypothetical protein 
F8A1                  0.005   coagulation factor VIII-associated protein 
F8A3                  0.005   coagulation factor VIII-associated (intronic transcr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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