Guide to the Human Genome
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Name: FCGBP Sequence: fasta or formatted (5405aa) NCBI GI: 154146262
Description:

Fc fragment of IgG binding protein

Referenced in:

Protein Composition and Structure
Fc Receptors
Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1        438           3
 C cysteine            8.0        435           1
 D aspartate           5.0        269           2
 E glutamate           4.6        246           2
 F phenylalanine       3.0        163           2
 G glycine            11.3        613           3
 H histidine           2.6        140           1
 I isoleucine          1.7         92           1
 K lysine              2.2        118           2
 L leucine             7.8        421           2
 M methionine          0.6         33           2
 N asparagine          3.3        177           2
 P proline             7.3        397           3
 Q glutamine           5.1        275           2
 R arginine            3.9        213           2
 S serine              7.0        376           4
 T threonine           5.4        290           3
 V valine              8.5        458           3
 W tryptophan          1.6         84           2
 Y tyrosine            3.1        167           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fc fragment of IgG binding protein 
LOC100290309          0.468   PREDICTED: hypothetical protein XP_002348012 
LOC100133944          0.250   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100293676          0.232   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100293643          0.098   PREDICTED: similar to Fc fragment of IgG binding pr...
ZAN                   0.073   zonadhesin isoform 3 
ZAN                   0.072   zonadhesin isoform 6 
TECTA                 0.071   tectorin alpha precursor 
MUC5AC                0.046   mucin 5AC 
MUC5B                 0.033   mucin 5, subtype B, tracheobronchial 
LOC100132635          0.033   PREDICTED: similar to mucin 5, partial 
SSPO                  0.032   SCO-spondin 
VWF                   0.031   von Willebrand factor preproprotein 
MUC2                  0.029   mucin 2 precursor 
C12orf64              0.025   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.025   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.025   PREDICTED: hypothetical protein LOC283310 
MUC6                  0.025   mucin 6, gastric 
OTOG                  0.024   PREDICTED: otogelin isoform 1 
OTOG                  0.024   PREDICTED: otogelin isoform 2 
OTOG                  0.024   PREDICTED: otogelin isoform 2 
OTOG                  0.024   PREDICTED: otogelin isoform 1 
OTOG                  0.024   PREDICTED: otogelin isoform 2 
OTOG                  0.024   PREDICTED: otogelin isoform 1 
LOC100291118          0.019   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.019   PREDICTED: hypothetical protein XP_002343203 
LOC100294420          0.017   PREDICTED: similar to mucin 2 
KCP                   0.016   cysteine rich BMP regulator 2 isoform 1 
BMPER                 0.014   BMP-binding endothelial regulator precursor protein ...
LOC100293409          0.013   PREDICTED: similar to Mucin-19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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