Guide to the Human Genome
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Name: LOC100131774 Sequence: fasta or formatted (295aa) NCBI GI: 169169847
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {278aa} PREDICTED: hypothetical protein
alt prot {470aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.6         55           6
 C cysteine            0.3          1           1
 D aspartate           2.7          8           1
 E glutamate           5.4         16           3
 F phenylalanine       1.0          3           1
 G glycine            17.3         51           3
 H histidine           4.4         13           1
 I isoleucine          1.4          4           1
 K lysine              1.7          5           1
 L leucine             7.5         22           2
 M methionine          1.7          5           1
 N asparagine          0.3          1           1
 P proline             6.4         19           2
 Q glutamine           3.4         10           1
 R arginine            9.2         27           2
 S serine              4.4         13           2
 T threonine           2.7          8           1
 V valine              7.5         22           2
 W tryptophan          2.7          8           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131774          0.917   PREDICTED: hypothetical protein 
LOC100131774          0.893   PREDICTED: hypothetical protein 
MAF                   0.038   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.038   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
LOC100292370          0.038   PREDICTED: hypothetical protein 
LOC728767             0.033   PREDICTED: hypothetical protein 
LOC728767             0.033   PREDICTED: hypothetical protein 
POU4F1                0.033   POU domain, class 4, transcription factor 1 
PPP1R10               0.033   protein phosphatase 1, regulatory subunit 10 
LOC100290946          0.029   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.029   PREDICTED: hypothetical protein XP_002344246 
ARID1A                0.029   AT rich interactive domain 1A isoform a 
ARID1A                0.029   AT rich interactive domain 1A isoform b 
LOC645249             0.028   PREDICTED: hypothetical protein 
LOC645249             0.028   PREDICTED: hypothetical protein 
LOC645249             0.028   PREDICTED: hypothetical protein 
KRT9                  0.026   keratin 9 
COL1A1                0.026   alpha 1 type I collagen preproprotein 
LOC643355             0.026   PREDICTED: hypothetical protein 
LOC643355             0.026   PREDICTED: hypothetical protein 
COL7A1                0.026   alpha 1 type VII collagen precursor 
RBM14                 0.026   RNA binding motif protein 14 
CHSY3                 0.026   chondroitin sulfate synthase 3 
POU3F3                0.026   POU class 3 homeobox 3 
LOC100292082          0.024   PREDICTED: hypothetical protein XP_002345881 
EN2                   0.024   engrailed homeobox 2 
ONECUT3               0.024   one cut homeobox 3 
LOC100293136          0.024   PREDICTED: hypothetical protein 
LOC100290831          0.024   PREDICTED: hypothetical protein XP_002347799 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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