Guide to the Human Genome
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Name: TMC4 Sequence: fasta or formatted (712aa) NCBI GI: 223718080
Description:

transmembrane channel-like 4 isoform 1

Referenced in:

Auditory and Vestibular Functions

Other entries for this name:
alt prot [706aa] transmembrane channel-like 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         57           2
 C cysteine            2.2         16           1
 D aspartate           1.7         12           1
 E glutamate           5.5         39           5
 F phenylalanine       5.2         37           3
 G glycine             7.0         50           2
 H histidine           0.8          6           1
 I isoleucine          3.2         23           2
 K lysine              2.9         21           2
 L leucine            17.3        123           4
 M methionine          1.0          7           1
 N asparagine          2.2         16           1
 P proline             6.6         47           2
 Q glutamine           4.4         31           2
 R arginine            6.5         46           2
 S serine              7.4         53           2
 T threonine           5.6         40           2
 V valine              6.9         49           2
 W tryptophan          2.4         17           1
 Y tyrosine            3.1         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane channel-like 4 isoform 1 
TMC4                  0.986   transmembrane channel-like 4 isoform 2 
TMC7                  0.292   transmembrane channel-like 7 isoform a 
TMC7                  0.291   transmembrane channel-like 7 isoform b 
TMC8                  0.219   transmembrane channel-like 8 
TMC5                  0.112   transmembrane channel-like 5 isoform a 
TMC5                  0.112   transmembrane channel-like 5 isoform c 
TMC1                  0.108   transmembrane channel-like 1 
TMC2                  0.105   transmembrane cochlear-expressed protein 2 
TMC5                  0.099   transmembrane channel-like 5 isoform b 
TMC6                  0.089   transmembrane channel-like 6 
TMC6                  0.089   transmembrane channel-like 6 
TMC3                  0.069   transmembrane channel-like 3 
AXIN2                 0.007   axin 2 
DUSP27                0.006   dual specificity phosphatase 27 
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
TRO                   0.006   trophinin isoform 5 
TRO                   0.006   trophinin isoform 2 
TRO                   0.006   trophinin isoform 2 
TFR2                  0.005   transferrin receptor 2 
FAM189A1              0.005   hypothetical protein LOC23359 
POU5F1                0.005   POU domain, class 5, transcription factor 1 isoform ...
SLC12A9               0.005   solute carrier family 12 (potassium/chloride transpo...
PLP1                  0.004   proteolipid protein 1 isoform 1 
PLP1                  0.004   proteolipid protein 1 isoform 1 
MINK1                 0.004   misshapen/NIK-related kinase isoform 4 
MINK1                 0.004   misshapen/NIK-related kinase isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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