Guide to the Human Genome
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Name: LOC100292723 Sequence: fasta or formatted (389aa) NCBI GI: 239753975
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         46           3
 C cysteine            1.3          5           1
 D aspartate           3.1         12           2
 E glutamate           2.8         11           1
 F phenylalanine       2.6         10           1
 G glycine             9.3         36           2
 H histidine           3.1         12           1
 I isoleucine          0.3          1           1
 K lysine              0.8          3           2
 L leucine            10.5         41           3
 M methionine          0.3          1           1
 N asparagine          1.3          5           2
 P proline            17.7         69           3
 Q glutamine           4.1         16           1
 R arginine           12.6         49           2
 S serine              8.2         32           3
 T threonine           3.3         13           2
 V valine              5.7         22           3
 W tryptophan          0.8          3           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288963          0.882   PREDICTED: hypothetical protein XP_002342546 
LOC100290128          0.813   PREDICTED: hypothetical protein XP_002346712 
NACA                  0.051   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.050   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.046   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.046   PREDICTED: hypothetical protein LOC80164 
PRR12                 0.046   proline rich 12 
SH3BP1                0.045   SH3-domain binding protein 1 
SYN1                  0.044   synapsin I isoform Ia 
SYN1                  0.044   synapsin I isoform Ib 
UBN2                  0.042   ubinuclein 2 
MBD6                  0.042   methyl-CpG binding domain protein 6 
KIAA0754              0.042   hypothetical protein LOC643314 
CPSF6                 0.041   cleavage and polyadenylation specific factor 6, 68 ...
LOC100131102          0.041   PREDICTED: hypothetical protein 
SF3B4                 0.041   splicing factor 3b, subunit 4 
PRB2                  0.041   proline-rich protein BstNI subfamily 2 
CCNK                  0.041   cyclin K isoform 1 
PRB3                  0.041   proline-rich protein BstNI subfamily 3 precursor [H...
WBP11                 0.041   WW domain binding protein 11 
FMNL1                 0.041   formin-like 1 
TNK2                  0.040   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.040   tyrosine kinase, non-receptor, 2 isoform 2 
PRB1                  0.038   proline-rich protein BstNI subfamily 1 isoform 1 pre...
USH1C                 0.038   harmonin isoform b3 
SYNJ1                 0.038   synaptojanin 1 isoform c 
MLL2                  0.038   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL4                  0.038   myeloid/lymphoid or mixed-lineage leukemia 4 
GLTSCR1               0.038   glioma tumor suppressor candidate region gene 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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