Guide to the Human Genome
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Name: LOC100291521 Sequence: fasta or formatted (537aa) NCBI GI: 239751973
Description:

PREDICTED: hypothetical protein XP_002348052

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         44           2
 C cysteine            2.2         12           1
 D aspartate           3.9         21           2
 E glutamate           6.5         35           2
 F phenylalanine       2.8         15           3
 G glycine            11.2         60           4
 H histidine           3.4         18           1
 I isoleucine          2.2         12           2
 K lysine              4.8         26           3
 L leucine             9.3         50           2
 M methionine          1.9         10           1
 N asparagine          2.8         15           1
 P proline             5.8         31           2
 Q glutamine           4.7         25           2
 R arginine            6.1         33           2
 S serine              9.7         52           2
 T threonine           4.7         25           1
 V valine              6.0         32           2
 W tryptophan          2.0         11           1
 Y tyrosine            1.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.998   PREDICTED: hypothetical protein XP_002344215 
LOC100131368          0.990   PREDICTED: similar to hCG1783157 
CST9                  0.029   cystatin 9 precursor 
CST9L                 0.018   cystatin 9-like precursor 
CST2                  0.017   cystatin SA precursor 
CST3                  0.014   cystatin C precursor 
CST4                  0.014   cystatin S precursor 
CST1                  0.014   cystatin SN precursor 
CST5                  0.009   cystatin D precursor 
WTIP                  0.009   Wilms tumor 1 interacting protein 
LOC730275             0.008   PREDICTED: hypothetical protein 
LOC730275             0.008   PREDICTED: hypothetical protein 
SPEG                  0.007   SPEG complex locus 
LOC100131436          0.007   PREDICTED: hypothetical protein 
LOC100131436          0.007   PREDICTED: hypothetical protein 
CUX1                  0.006   cut-like homeobox 1 isoform a 
DMD                   0.006   dystrophin Dp427c isoform 
DMD                   0.006   dystrophin Dp140c isoform 
DMD                   0.006   dystrophin Dp116 isoform 
DMD                   0.006   dystrophin Dp260-2 isoform 
DMD                   0.006   dystrophin Dp260-1 isoform 
DMD                   0.006   dystrophin Dp427p2 isoform 
DMD                   0.006   dystrophin Dp427p1 isoform 
DMD                   0.006   dystrophin Dp140bc isoform 
DMD                   0.006   dystrophin Dp140ab isoform 
DMD                   0.006   dystrophin Dp140b isoform 
DMD                   0.006   dystrophin Dp71ab isoform 
DMD                   0.006   dystrophin Dp71a isoform 
DMD                   0.006   dystrophin Dp71b isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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