Guide to the Human Genome
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Name: HABP4 Sequence: fasta or formatted (413aa) NCBI GI: 157676331
Description:

hyaluronan binding protein 4

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         35           5
 C cysteine            0.5          2           1
 D aspartate           7.3         30           2
 E glutamate          10.2         42           3
 F phenylalanine       3.1         13           1
 G glycine            12.1         50           3
 H histidine           1.0          4           1
 I isoleucine          1.7          7           1
 K lysine              4.6         19           1
 L leucine             3.6         15           2
 M methionine          2.2          9           1
 N asparagine          2.9         12           1
 P proline             8.5         35           1
 Q glutamine           5.1         21           3
 R arginine           12.8         53           3
 S serine              4.8         20           1
 T threonine           3.6         15           1
 V valine              5.1         21           2
 W tryptophan          0.7          3           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hyaluronan binding protein 4 
SERBP1                0.284   SERPINE1 mRNA binding protein 1 isoform 4 
SERBP1                0.280   SERPINE1 mRNA binding protein 1 isoform 2 
SERBP1                0.277   SERPINE1 mRNA binding protein 1 isoform 3 
SERBP1                0.273   SERPINE1 mRNA binding protein 1 isoform 1 
LOC100287144          0.068   PREDICTED: hypothetical protein XP_002342471 
LOC100287513          0.067   PREDICTED: hypothetical protein XP_002342480 
LOC100287404          0.067   PREDICTED: hypothetical protein XP_002342477 
LOC100287205          0.067   PREDICTED: hypothetical protein XP_002342473 
LOC728419             0.067   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.067   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.067   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.067   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
USP17L5               0.067   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC728379             0.067   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             0.067   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728369             0.067   PREDICTED: similar to deubiquitinating enzyme 3 [Ho...
LOC100287478          0.067   PREDICTED: hypothetical protein XP_002342479 
LOC100287327          0.067   PREDICTED: hypothetical protein XP_002342475 
LOC100287238          0.067   PREDICTED: hypothetical protein XP_002342474 
LOC728379             0.066   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287441          0.066   PREDICTED: hypothetical protein XP_002342478 
LOC100288520          0.066   PREDICTED: hypothetical protein XP_002342486 
LOC100287178          0.066   PREDICTED: hypothetical protein XP_002342472 
USP17                 0.066   ubiquitin specific peptidase 17 
LOC728373             0.066   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
USP17L7               0.066   PREDICTED: Inactive ubiquitin carboxyl-terminal hydr...
USP17L3               0.066   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100287364          0.066   PREDICTED: hypothetical protein XP_002342476 
DUB3                  0.066   deubiquitinating enzyme 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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